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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX87424 Canola cytosol 100.0 100.0
Bra035074.1-P Field mustard cytosol 99.68 99.68
CDY57944 Canola cytosol 99.04 99.04
CDX79274 Canola cytosol 99.04 99.04
CDY67023 Canola cytosol 79.45 97.63
AT1G78900.1 Thale cress cytosol 97.27 97.27
VIT_09s0054g00890.t01 Wine grape extracellular 94.06 94.06
PGSC0003DMT400068136 Potato cytosol 93.9 93.9
KRH46991 Soybean nucleus 93.9 93.9
Solyc06g063330.2.1 Tomato cytosol, unclear 93.74 93.74
KRH44667 Soybean nucleus 93.74 93.74
Solyc12g055800.1.1 Tomato plastid 93.42 93.42
PGSC0003DMT400074197 Potato cytosol 93.1 93.1
GSMUA_Achr1P10520_001 Banana plasma membrane 90.69 90.98
GSMUA_Achr11P... Banana cytosol 90.53 90.82
GSMUA_Achr9P23040_001 Banana cytosol 90.21 90.5
CDX77882 Canola mitochondrion 12.68 36.57
CDX73218 Canola cytosol 20.22 26.09
CDX87646 Canola cytosol 20.22 25.82
CDY01384 Canola cytosol 17.98 25.81
CDY29363 Canola cytosol 20.06 25.72
CDX69928 Canola cytosol 18.46 25.61
CDY44784 Canola cytosol 18.46 25.61
CDY21559 Canola cytosol 18.46 25.61
CDY31899 Canola cytosol 19.9 25.51
CDX96645 Canola cytosol 19.9 25.51
CDY51327 Canola cytosol 19.9 25.51
CDY54328 Canola cytosol 19.9 25.51
CDY21558 Canola mitochondrion 19.58 22.06
CDY44783 Canola mitochondrion 19.58 22.06
CDX69929 Canola mitochondrion 19.58 22.02
CDX78350 Canola mitochondrion 19.58 22.02
CDY40737 Canola mitochondrion 19.58 21.98
CDY40736 Canola cytosol 19.58 21.98
CDX81118 Canola mitochondrion 19.58 21.98
CDX81119 Canola mitochondrion 19.58 21.94
CDX78351 Canola mitochondrion 19.58 21.94
CDY17918 Canola cytosol 10.59 20.75
CDY21198 Canola cytosol 7.54 20.35
CDY38701 Canola plastid 19.42 20.13
CDX99946 Canola plastid 19.42 20.13
CDX98579 Canola plastid 19.42 20.13
CDY17919 Canola cytosol 4.17 17.69
CDX99333 Canola mitochondrion 5.78 15.86
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.10.1140.10Gene3D:2.40.30.20Gene3D:2.40.50.100MapMan:24.1.1.2.1
Gene3D:3.40.50.300GO:A0A078DIX4InterPro:ATP-synth_a_XtnInterPro:ATP_synth_asu-like_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_CInterPro:ATPase_V1-cplx_asuInterPro:ATPase_a/bsu_ASEnsemblPlants:CDX88489ProteinID:CDX88489
ProteinID:CDX88489.1GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152
GO:GO:0009987GO:GO:0015991GO:GO:0016020GO:GO:0016787GO:GO:0033180GO:GO:0046034
GO:GO:0046961GO:GO:1902600EnsemblPlantsGene:GSBRNA2T00148037001InterPro:IPR023366InterPro:IPR024034HAMAP:MF_00309
InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF02874PFAM:PF16886ScanProsite:PS00152PANTHER:PTHR43607
PANTHER:PTHR43607:SF3MetaCyc:PWY-7219SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR01042
UniParc:UPI0004EB241DInterPro:V-ATPase_asuSEG:seg:::
Description
BnaC06g39330D
Coordinates
chrLK031855:+:1250159..1254538
Molecular Weight (calculated)
68665.1 Da
IEP (calculated)
4.865
GRAVY (calculated)
-0.170
Length
623 amino acids
Sequence
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGN DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIAKRSGDVY IPRGVSVPAL DKDCLWEFQP NDFVEGDTIT GGDLYATVFE NTLMTHRVAL PPDAMGKITY LAPAGQYSLK DTVLELEFQG
201: VKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGMNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERDGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQSVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEAAL
601: VAKFKKLYED LTAGFRALED ETR
Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
Arabidopsis Description
VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.