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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 4
  • cytosol 1
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY38701 Canola plastid 100.0 100.0
CDY17918 Canola cytosol 52.91 100.0
CDX99946 Canola plastid 100.0 100.0
ATCG00480.1 Thale cress cytosol 80.7 97.39
CDY21198 Canola cytosol 34.61 90.04
CDY17919 Canola cytosol 21.3 87.07
Solyc04g039850.1.1 Tomato cytosol 18.47 79.86
CDX69928 Canola cytosol 51.58 69.04
CDY44784 Canola cytosol 51.58 69.04
CDY21559 Canola cytosol 51.58 69.04
HORVU4Hr1G016830.2 Barley cytosol, mitochondrion, nucleus 9.82 58.42
CDY44783 Canola mitochondrion 53.74 58.41
CDY21558 Canola mitochondrion 53.74 58.41
CDX69929 Canola mitochondrion 53.74 58.3
CDX78350 Canola mitochondrion 53.74 58.3
CDX81118 Canola mitochondrion 53.74 58.2
CDY40737 Canola mitochondrion 53.74 58.2
CDY40736 Canola cytosol 53.74 58.2
CDX81119 Canola mitochondrion 53.74 58.09
CDX78351 Canola mitochondrion 53.74 58.09
Zm00001d020223_P001 Maize cytosol 8.49 45.13
CDX73218 Canola cytosol 16.47 20.5
CDX87646 Canola cytosol 16.47 20.29
CDY01384 Canola cytosol 14.64 20.28
CDY67023 Canola cytosol 16.81 19.92
CDY51327 Canola cytosol 15.97 19.75
CDY54328 Canola cytosol 15.97 19.75
CDY31899 Canola cytosol 15.81 19.55
CDY29363 Canola cytosol 15.81 19.55
CDX79274 Canola cytosol 20.13 19.42
CDY57944 Canola cytosol 20.13 19.42
CDX88489 Canola cytosol 20.13 19.42
CDX87424 Canola cytosol 20.13 19.42
CDX96645 Canola cytosol 15.64 19.34
CDX99333 Canola mitochondrion 4.66 12.33
CDX77882 Canola mitochondrion 3.66 10.19
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.2Gene3D:1.10.1140.10Gene3D:2.40.10.170Gene3D:2.60.15.10
Gene3D:3.40.50.300GO:A0A078HM70UniProt:A0A078HM70InterPro:AAA+_ATPaseInterPro:ATP_synth_F1_bsuInterPro:ATP_synth_F1_dsu/esu_C
InterPro:ATP_synth_F1_dsu/esu_NInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_CInterPro:ATPase_a/bsu_AS
InterPro:ATPsynth_dsu/esu_NEnsemblPlants:CDX98579ProteinID:CDX98579ProteinID:CDX98579.1ProteinID:CDY38701.1ncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006754
GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015986GO:GO:0015992
GO:GO:0016020GO:GO:0016787GO:GO:0045261GO:GO:0046034GO:GO:0046933GO:GO:0099132
GO:GO:1902600EnsemblPlantsGene:GSBRNA2T00106254001InterPro:IPR024034InterPro:IPR036771HAMAP:MF_01347InterPro:P-loop_NTPase
PFAM:PD000944PFAM:PF00006PFAM:PF00401PFAM:PF02823PFAM:PF02874ScanProsite:PS00152
PANTHER:PTHR15184PANTHER:PTHR15184:SF43MetaCyc:PWY-7219SMART:SM00382SUPFAM:SSF47917SUPFAM:SSF50615
SUPFAM:SSF51344SUPFAM:SSF52540TIGRFAMs:TIGR01039UniParc:UPI0004EED0DD::
Description
BnaC05g37960DATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HM70]
Coordinates
chrLK031905:+:1238622..1241146
Molecular Weight (calculated)
65219.6 Da
IEP (calculated)
4.915
GRAVY (calculated)
-0.035
Length
601 amino acids
Sequence
(BLAST)
001: MIFDSPNTSL LFFLYSKNFA TKLNIFFIMR INPTTSDPAV SIREKNNLGR IAQIIGPVLD VAFPPGKMPN IYNALVVKGR DTLGQEINVT CEVQQLLGNN
101: RVRAVAMSAT EGLKRGMDVV DMGNPLSVPV GGATLGRIFN VLGEPVDNLG PVDTLTTSPI HKSAPAFIDL DTTLSIFETG IKVVDLLAPY RRGGKIGLFG
201: GAGVGKTVLI MELINNIAKA HGGVSVFGGV GERTREGNDL YMEMKESGVI NELNLADSKV ALVYGQMNEP PGARMRVGLT ALTMAEYFRD VNEQDVLLFI
301: DNIFRFVQAG SEVSALLGRM PSAVGYQPTL STEMGSLQER ITSTKKGSIT SIQAVYVPAD DLTDPAPATT FAHLDATTVL SRGLAAKGIY PAVDPLDSTS
401: TMLQPRIVGE EHYETAQQVK QTLQRYKELQ DIIAILGLDE LSEEDRLTVA RARKIERFLS QPFFVAEVFT GSPGKYVGLA ETIRGFNLIL SGEFDSLPEQ
501: AFYLVGNIDE ATAKATNLEM EKVKEIILST NSGQIGVLPN HAPIATAVDI EKNSDIDPQE AQQTLEIAEA NLRKAEGKRQ TIEANLALRR ARTRVEALNT
601: I
Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)
001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
Arabidopsis Description
ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.