CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY36813
CDY44603

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	CDY36813	AT5G35410.1	17875927
AT1G76030.1	CDY44603	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015797.1-P	Field mustard	cytosol	100.0	100.0
CDX73218	Canola	cytosol	98.36	99.38
AT1G76030.1	Thale cress	cytosol	98.57	98.97
CDY01384	Canola	cytosol	87.5	98.39
CDY31899	Canola	cytosol	96.93	97.33
CDX96645	Canola	cytosol	96.72	97.12
CDY51327	Canola	cytosol	96.52	96.91
CDY54328	Canola	cytosol	96.52	96.91
CDY29363	Canola	cytosol	95.9	96.3
Solyc01g111760.2.1	Tomato	plastid	94.47	96.24
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.26	96.03
PGSC0003DMT400068704	Potato	cytosol	94.26	96.03
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	94.88	94.88
TraesCS6B01G218100.1	Wheat	cytosol	94.88	94.88
TraesCS6A01G186300.1	Wheat	cytosol	94.88	94.88
VIT_03s0038g02760.t01	Wine grape	cytosol	94.67	94.67
KXG20226	Sorghum	cytosol	94.47	94.66
Zm00001d036961_P004	Maize	plasma membrane, plastid	94.47	94.66
TraesCS7A01G362000.1	Wheat	cytosol	94.47	94.47
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	94.47	94.47
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	94.47	94.47
TraesCS7D01G361000.1	Wheat	cytosol	94.47	94.47
Zm00001d046336_P001	Maize	cytosol	94.47	92.57
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	94.88	92.05
PGSC0003DMT400008800	Potato	cytosol	94.47	87.98
HORVU7Hr1G087190.1	Barley	plastid	94.67	87.67
HORVU6Hr1G039890.3	Barley	mitochondrion	95.08	85.29
CDX99333	Canola	mitochondrion	17.83	38.33
CDY21559	Canola	cytosol	19.67	21.38
CDX69928	Canola	cytosol	19.67	21.38
CDY44784	Canola	cytosol	19.67	21.38
CDY67023	Canola	cytosol	21.93	21.1
CDX87424	Canola	cytosol	25.82	20.22
CDX88489	Canola	cytosol	25.82	20.22
CDX79274	Canola	cytosol	25.61	20.06
CDY57944	Canola	cytosol	25.61	20.06
CDY21558	Canola	mitochondrion	21.11	18.63
CDY44783	Canola	mitochondrion	21.11	18.63
CDX78350	Canola	mitochondrion	21.11	18.59
CDX69929	Canola	mitochondrion	21.11	18.59
CDX81118	Canola	mitochondrion	21.11	18.56
CDY40737	Canola	mitochondrion	21.11	18.56
CDY40736	Canola	cytosol	21.11	18.56
CDX81119	Canola	mitochondrion	21.11	18.53
CDX78351	Canola	mitochondrion	21.11	18.53
CDY17919	Canola	cytosol	5.33	17.69
CDY21198	Canola	cytosol	8.2	17.32
CDY17918	Canola	cytosol	10.86	16.67
CDX99946	Canola	plastid	20.29	16.47
CDX98579	Canola	plastid	20.29	16.47
CDY38701	Canola	plastid	20.29	16.47
CDX77882	Canola	mitochondrion	3.89	8.8

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	GO:A0A078DEH2	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlants:CDX87646	ProteinID:CDX87646	ProteinID:CDX87646.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0016020
GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00146652001	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI0002541FF7	InterPro:V-ATPase_su_B/beta	:

Description

BnaA07g32270D

Coordinates

chrLK031850:-:1621927..1624836

Molecular Weight (calculated)

54287.0 Da

IEP (calculated)

4.729

GRAVY (calculated)

-0.245

Length

488 amino acids

Sequence
(BLAST)

001: MGANDIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TADLLEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRIALTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRKD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTTTT

Best Arabidopsis Sequence Match ( AT1G76030.1 )
(BLAST)

001: MGTNDLDIEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TVDLLEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRIALTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRKD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTS

Arabidopsis Description

VHA-B1V-type proton ATPase subunit B1 [Source:UniProtKB/Swiss-Prot;Acc:P11574]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.