Factsheet for Zm00001d046336_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000407_P001
Zm00001d036879_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	Zm00001d000407_P001	AT5G35410.1	17875927
AT1G76030.1	Zm00001d036879_P001	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036961_P004	Maize	plasma membrane, plastid	97.39	99.59
KXG20226	Sorghum	cytosol	97.39	99.59
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	96.39	98.36
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	96.18	98.16
TraesCS7D01G361000.1	Wheat	cytosol	96.18	98.16
TraesCS7A01G362000.1	Wheat	cytosol	95.98	97.95
Solyc01g111760.2.1	Tomato	plastid	93.57	97.29
PGSC0003DMT400068704	Potato	cytosol	92.97	96.66
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	92.77	96.45
Bra025804.1-P	Field mustard	cytosol	78.11	96.29
CDY01384	Canola	cytosol	83.33	95.62
VIT_03s0038g02760.t01	Wine grape	cytosol	92.97	94.88
AT1G20260.1	Thale cress	cytosol	92.77	94.87
CDY54328	Canola	cytosol	92.57	94.86
CDX73218	Canola	cytosol	91.97	94.82
CDY51327	Canola	cytosol	92.37	94.65
CDX87646	Canola	cytosol	92.57	94.47
Bra015797.1-P	Field mustard	cytosol	92.57	94.47
AT1G76030.1	Thale cress	cytosol	92.17	94.44
CDY31899	Canola	cytosol	92.17	94.44
CDX96645	Canola	cytosol	92.17	94.44
CDY29363	Canola	cytosol	91.77	94.03
Bra012223.1-P	Field mustard	endoplasmic reticulum	87.35	92.36
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	92.77	91.85
HORVU7Hr1G087190.1	Barley	plastid	96.39	91.08
PGSC0003DMT400008800	Potato	cytosol	93.78	89.12
Zm00001d015426_P001	Maize	cytosol	21.89	21.67
GRMZM5G808402_P01	Maize	cytosol, mitochondrion, plastid	20.48	20.48
Zm00001d006403_P001	Maize	plastid	20.48	20.48
Zm00001d053765_P003	Maize	cytosol	24.7	19.81
Zm00001d050687_P001	Maize	cytosol	8.84	18.49
Zm00001d009488_P001	Maize	plasma membrane	19.88	17.9
Zm00001d038929_P001	Maize	mitochondrion	19.88	17.9
Zm00001d043834_P001	Maize	mitochondrion	19.88	17.4
Zm00001d000277_P001	Maize	plastid	18.27	16.13
Zm00001d020223_P001	Maize	cytosol	3.61	15.93
Zm00001d015427_P001	Maize	extracellular, plastid	2.61	10.83

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:100286306	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	UniProt:A0A1D6P248
ProteinID:AQL04083.1	ProteinID:AQL04085.1	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI000844DAA2	InterPro:V-ATPase_su_B/beta	EnsemblPlantsGene:Zm00001d046336	EnsemblPlants:Zm00001d046336_P001
EnsemblPlants:Zm00001d046336_T001	:	:	:	:	:

Description

vacuolar proton pump2 vacuolar proton pump2

Coordinates

chr9:-:81443409..81455205

Molecular Weight (calculated)

55372.3 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.228

Length

498 amino acids

Sequence
(BLAST)

001: MAWLAVARFF SMGLVKEGID MEEGTLEIGM EYRTVSGVAG PLVILDKVKG PKYQEIVNIR LGDGTNRRGQ VLEVDGEKAV VQVFEGTSGI DNKYTTVQFT
101: GEVLKTPVSL DMLGRIFNGS GKPIDNGPPI LPEAYLDISG SSINPSERTY PEEMIQTGIS TIDVMNSIAR GQKIPLFSAA GLPHNEIAAQ ICRQAGLVKT
201: LEKGKHAEGG EDDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA
301: AREEVPGRRG YPGYMYTDLA TIYERAGRIE GRTGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR
401: RDHSDVSNQL YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VTQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ YYSRDASH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.