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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc10g055670.1.1 Tomato cytosol, nucleus, unclear 98.33 98.33
CDY01384 Canola cytosol 87.06 96.08
KRG90658 Soybean cytosol 97.7 95.9
KXG20226 Sorghum cytosol 97.49 95.89
Zm00001d036961_P004 Maize plasma membrane, plastid 97.49 95.89
TraesCS3D01G250900.1 Wheat cytosol 97.49 95.7
KRH36093 Soybean endoplasmic reticulum 97.49 95.7
KRH00994 Soybean cytosol 97.49 95.5
GSMUA_Achr2P16710_001 Banana cytosol 97.29 95.49
VIT_03s0038g02760.t01 Wine grape cytosol 97.29 95.49
TraesCS3A01G250500.1 Wheat extracellular 97.29 95.49
KRH40221 Soybean nucleus 97.29 95.3
TraesCS6B01G218100.1 Wheat cytosol 97.08 95.29
TraesCS6D01G173400.1 Wheat cytosol, nucleus, plastid, unclear 97.08 95.29
Os01t0711000-01 Rice plastid 97.08 95.29
GSMUA_Achr7P09090_001 Banana cytosol, plasma membrane 97.08 95.29
TraesCS6A01G186300.1 Wheat cytosol 97.08 95.29
CDX73218 Canola cytosol 96.03 95.24
Os06t0568200-01 Rice nucleus, plasma membrane, vacuole 96.87 95.08
TraesCS7B01G265500.1 Wheat golgi, nucleus, plastid 96.87 95.08
TraesCS7A01G362000.1 Wheat cytosol 96.87 95.08
TraesCS7D01G361000.1 Wheat cytosol 96.87 95.08
Bra025804.1-P Field mustard cytosol 79.96 94.8
OQU84653 Sorghum cytosol 96.45 94.67
CDX87646 Canola cytosol 96.24 94.47
Bra015797.1-P Field mustard cytosol 96.24 94.47
AT4G38510.5 Thale cress cytosol 97.29 94.33
CDY54328 Canola cytosol 95.62 94.24
CDY51327 Canola cytosol 95.41 94.03
CDY31899 Canola cytosol 95.2 93.83
CDX96645 Canola cytosol 95.2 93.83
Zm00001d046336_P001 Maize cytosol 97.29 93.57
CDY29363 Canola cytosol 94.78 93.42
Bra012223.1-P Field mustard endoplasmic reticulum 91.23 92.78
VIT_18s0001g01020.t01 Wine grape cytosol, extracellular 97.29 92.64
PGSC0003DMT400008800 Potato cytosol 99.79 91.22
HORVU3Hr1G067000.1 Barley cytosol 48.64 90.31
HORVU7Hr1G087190.1 Barley plastid 97.08 88.24
HORVU3Hr1G067040.5 Barley cytosol, plastid 97.49 88.11
HORVU6Hr1G039890.3 Barley mitochondrion 97.29 85.66
TraesCS3B01G280000.2 Wheat cytosol 95.62 83.88
Solyc12g055800.1.1 Tomato plastid 25.89 19.9
Solyc06g063330.2.1 Tomato cytosol, unclear 25.26 19.42
Solyc12g042230.1.1 Tomato cytosol 3.76 19.35
Solyc02g091130.2.1 Tomato unclear 20.88 18.15
Solyc05g008460.2.1 Tomato plastid 20.25 17.41
Solyc04g007550.2.1 Tomato plastid 20.04 17.08
Solyc01g007320.2.1 Tomato plastid 21.5 16.91
Solyc04g039850.1.1 Tomato cytosol 4.38 15.11
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:24.1.1.2.2Gene3D:3.40.50.12240InterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsuInterPro:ATPase_a/bsu_ASGO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009987
GO:GO:0015991GO:GO:0015992GO:GO:0016020GO:GO:0033180GO:GO:0046034GO:GO:1902600
UniProt:K4B438HAMAP:MF_00310InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF02874PIRSF:PIRSF039114
ScanProsite:PS00152PANTHER:PTHR43389PANTHER:PTHR43389:SF6SUPFAM:SSF52540EnsemblPlantsGene:Solyc01g111760.2EnsemblPlants:Solyc01g111760.2.1
TIGRFAMs:TIGR01040UniParc:UPI00027678E7InterPro:V-ATPase_su_B/beta:::
Description
No Description!
Coordinates
chr1:+:97940290..97946039
Molecular Weight (calculated)
53331.7 Da
IEP (calculated)
4.769
GRAVY (calculated)
-0.283
Length
479 amino acids
Sequence
(BLAST)
001: MEEGTLEVGM EYRTVSGVAG PLVILDKVKG PKYQEIVNIR LGDGTTRRGQ VLEVDGEKAV VQVFEGTSGI DNKYTTVQFT GEVLKTPVSL DMLGRIFNGS
101: GKPIDNGPPI LPEAYRDISG SSINPSERTY PEEMIQTGIS TVDVMNSIAR GQKIPLFSAA GLPHNEIAAQ ICRQAGLVKR LEKSDNLLEG GEEDNFAIVF
201: AAMGVNMETA QFFKRDFEEN GSMERVTLFL NLANDPTIER IITPRIALTT AEYLAYECGK HVLVILTDMS SYADALREVS AAREEVPGRR GYPGYMYTDL
301: ATIYERAGRI EGRTGSITQI PILTMPNDDI THPTPDLTGY ITEGQIYIDR QLHNRQIYPP INVLPSLSRL MKSAIGEGMT RRDHSDVSNQ LYANYAIGKD
401: VQAMKAVVGE EALSSEDLLY LEFLDKFERK FVSQGAYDTR NIFQSLDLAW TLLRIFPREL LHRIPAKTLD QYYSRDASN
Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)
001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN
Arabidopsis Description
ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.