Factsheet for Solyc05g008460.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813
plastid: 28183294
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 28183294 doi

R Tamburino, M Vitale, A Ruggiero, M Sassi, L Sannino, S Arena, A Costa, G Batelli, N Zambrano, A Scaloni, S Grillo, N Scotti

Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078507	Potato	cytosol	99.1	99.28
Solyc04g007550.2.1	Tomato	plastid	96.05	95.2
CDX69928	Canola	cytosol	73.79	91.54
CDY44784	Canola	cytosol	73.79	91.54
CDY21559	Canola	cytosol	73.79	91.54
KXG22502	Sorghum	mitochondrion	90.13	90.78
KXG33146	Sorghum	mitochondrion	89.95	90.43
Zm00001d038929_P001	Maize	mitochondrion	89.77	90.42
Zm00001d009488_P001	Maize	plasma membrane	89.59	90.24
Os05t0553000-02	Rice	mitochondrion	89.41	90.22
TraesCS3B01G298000.1	Wheat	mitochondrion	88.51	89.47
Solyc02g091130.2.1	Tomato	unclear	87.97	88.93
GSMUA_Achr3P20950_001	Banana	mitochondrion	88.69	88.85
TraesCS3D01G264800.2	Wheat	golgi	87.97	88.77
HORVU3Hr1G063590.2	Barley	plasma membrane	87.79	88.75
TraesCS1B01G400300.1	Wheat	cytosol	71.1	88.59
HORVU1Hr1G083840.2	Barley	mitochondrion	87.43	87.91
Zm00001d043834_P001	Maize	mitochondrion	89.41	87.52
AT5G08670.1	Thale cress	mitochondrion	83.3	83.45
AT5G08690.1	Thale cress	mitochondrion	83.3	83.45
Bra009363.1-P	Field mustard	mitochondrion	83.12	83.42
CDY44783	Canola	mitochondrion	82.76	83.36
CDY21558	Canola	mitochondrion	82.76	83.36
CDX81119	Canola	mitochondrion	83.12	83.27
CDX78351	Canola	mitochondrion	83.12	83.27
CDX69929	Canola	mitochondrion	82.76	83.21
CDX78350	Canola	mitochondrion	82.59	83.03
AT5G08680.1	Thale cress	mitochondrion	83.3	83.01
CDX81118	Canola	mitochondrion	82.59	82.88
CDY40737	Canola	mitochondrion	82.41	82.7
CDY40736	Canola	cytosol	82.41	82.7
Bra006013.1-P	Field mustard	mitochondrion	82.23	82.67
Bra009360.1-P	Field mustard	mitochondrion	82.05	82.64
Bra028648.1-P	Field mustard	mitochondrion	82.23	82.52
Bra028649.1-P	Field mustard	mitochondrion	80.07	79.08
KRH48739	Soybean	cytosol, mitochondrion	35.73	75.09
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	16.88	72.31
KRH18721	Soybean	cytosol	26.03	65.61
Bra006014.1-P	Field mustard	mitochondrion	82.94	62.6
Solyc04g039850.1.1	Tomato	cytosol	15.08	60.43
Solyc12g042230.1.1	Tomato	cytosol	9.69	58.06
Solyc01g007320.2.1	Tomato	plastid	58.71	53.69
Solyc12g055800.1.1	Tomato	plastid	22.98	20.55
Solyc01g111760.2.1	Tomato	plastid	17.41	20.25
Solyc06g063330.2.1	Tomato	cytosol, unclear	22.62	20.22
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	17.06	19.83

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.10.910	Gene3D:1.10.1140.10	MapMan:2.4.6.2.2	Gene3D:2.40.10.170
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933
GO:GO:0099132	GO:GO:1902600	InterPro:IPR024034	UniProt:K4BX20	HAMAP:MF_01347	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PFAM:PF11421	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184
PANTHER:PTHR15184:SF44	SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc05g008460.2
EnsemblPlants:Solyc05g008460.2.1	TIGRFAMs:TIGR01039	UniParc:UPI000276649C	SEG:seg	:	:

Description

ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:K4BX20]

Coordinates

chr5:-:2805741..2809779

Molecular Weight (calculated)

59610.5 Da

IEP (calculated)

5.906

GRAVY (calculated)

-0.092

Length

557 amino acids

Sequence
(BLAST)

001: MASRRLMASL LRSTAQRGGA ISRSPLANSI PKATSRASPA GFLLNRAVKY ATSAAAPADK SATPPKSSGN EPTGKITDEF TGAGAVGKVC QVIGAVVDVR
101: FDEGLPPILT ALEVLDNQIR LVLEVAQHLG ENMVRTIAMD GTEGLVRGQR VLNTGSPITV PVGRSTLGRI MNVIGEPIDE RGDITTDHFL PIHREAPAFV
201: EQATEQQILV TGIKVVDLLA PYQRGGKIGL FGGAGVGKTV LIMELINNVA KAHGGFSVFA GVGERTREGN DLYREMIESG VIKLGEKQSE SKCALVYGQM
301: NEPPGARARV GLTGLTVAEH FRDAEGQDVL LFIDNIFRFT QANSEVSALL GRIPSAVGYQ PTLATDLGGL QERITTTKKG SITSVQAIYV PADDLTDPAP
401: ATTFAHLDAT TVLSRQISEL GIYPAVDPLD STSRMLSPHI LGEDHYNTAR GVQKVLQNYK NLQDIIAILG MDELSEDDKM TVARARKIQR FLSQPFHVAE
501: VFTGAPGKYV DLKESINSFQ GVLDGKYDDL SEQSFYMVGG IEEVIAKAEK IAKESAA

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.