Factsheet for Solyc04g007550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015365	Potato	mitochondrion	99.29	99.29
Solyc05g008460.2.1	Tomato	plastid	95.2	96.05
CDX69928	Canola	cytosol	73.13	91.54
CDY44784	Canola	cytosol	73.13	91.54
CDY21559	Canola	cytosol	73.13	91.54
KXG22502	Sorghum	mitochondrion	88.43	89.87
KXG33146	Sorghum	mitochondrion	88.43	89.71
Zm00001d038929_P001	Maize	mitochondrion	88.26	89.69
Zm00001d009488_P001	Maize	plasma membrane	88.08	89.51
Os05t0553000-02	Rice	mitochondrion	87.72	89.31
GSMUA_Achr3P20950_001	Banana	mitochondrion	87.72	88.67
Solyc02g091130.2.1	Tomato	unclear	86.65	88.38
TraesCS1B01G400300.1	Wheat	cytosol	70.28	88.37
TraesCS3B01G298000.1	Wheat	mitochondrion	86.48	88.2
HORVU3Hr1G063590.2	Barley	plasma membrane	86.3	88.02
TraesCS3D01G264800.2	Wheat	golgi	85.94	87.5
HORVU1Hr1G083840.2	Barley	mitochondrion	85.77	87.0
Zm00001d043834_P001	Maize	mitochondrion	87.9	86.82
Bra009363.1-P	Field mustard	mitochondrion	82.74	83.78
CDX69929	Canola	mitochondrion	82.56	83.75
CDY21558	Canola	mitochondrion	82.38	83.73
AT5G08670.1	Thale cress	mitochondrion	82.74	83.63
AT5G08690.1	Thale cress	mitochondrion	82.74	83.63
CDY44783	Canola	mitochondrion	82.21	83.54
CDX78351	Canola	mitochondrion	82.56	83.45
CDX78350	Canola	mitochondrion	82.21	83.39
AT5G08680.1	Thale cress	mitochondrion	82.92	83.36
CDX81118	Canola	mitochondrion	82.21	83.24
Bra009360.1-P	Field mustard	mitochondrion	81.85	83.18
CDX81119	Canola	mitochondrion	82.21	83.09
Bra006013.1-P	Field mustard	mitochondrion	81.85	83.03
CDY40737	Canola	mitochondrion	81.85	82.88
CDY40736	Canola	cytosol	81.85	82.88
Bra028648.1-P	Field mustard	mitochondrion	81.67	82.7
Bra028649.1-P	Field mustard	mitochondrion	79.36	79.08
KRH48739	Soybean	cytosol, mitochondrion	35.41	75.09
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	16.73	72.31
KRH18721	Soybean	cytosol	25.98	66.06
Bra006014.1-P	Field mustard	mitochondrion	82.38	62.74
Solyc04g039850.1.1	Tomato	cytosol	14.95	60.43
Solyc12g042230.1.1	Tomato	cytosol	9.61	58.06
Solyc01g007320.2.1	Tomato	plastid	58.19	53.69
Solyc12g055800.1.1	Tomato	plastid	22.24	20.06
Solyc01g111760.2.1	Tomato	plastid	17.08	20.04
Solyc06g063330.2.1	Tomato	cytosol, unclear	21.89	19.74
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	16.73	19.62

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.10.910	Gene3D:1.10.1140.10	MapMan:2.4.6.2.2	Gene3D:2.40.10.170
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0000275	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933
GO:GO:0099132	GO:GO:1902600	InterPro:IPR024034	UniProt:K4BNR2	HAMAP:MF_01347	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PFAM:PF11421	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184
PANTHER:PTHR15184:SF44	SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc04g007550.2
EnsemblPlants:Solyc04g007550.2.1	TIGRFAMs:TIGR01039	UniParc:UPI00027669C4	SEG:seg	:	:

Description

ATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:K4BNR2]

Coordinates

chr4:+:1237504..1241655

Molecular Weight (calculated)

59865.8 Da

IEP (calculated)

6.269

GRAVY (calculated)

-0.073

Length

562 amino acids

Sequence
(BLAST)

001: MASRRLIASL LRSSAQRGAG SGGGPISRSS VANSIARPAS RASPKGFLLN RAVQYATSAA APASKPSTPP KSSGSEVSGK ITDEFTGAGA IGKVCQVIGA
101: VVDVRFDDGL PPILTALEVL DNQIRLVLEV AQHLGENMVR TIAMDGTEGL VRGQRVLNTG SPITVPVGRS TLGRIMNVIG EAIDERGPIT TDHFLPIHRE
201: APAFVEQATE QQILVTGIKV VDLLAPYQRG GKIGLFGGAG VGKTVLIMEL INNVAKAHGG FSVFAGVGER TREGNDLYRE MIESGVIKLG EKQSESKCAL
301: VYGQMNEPPG ARARVGLTGL TVAEHFRDAE GQDVLLFIDN IFRFTQANSE VSALLGRIPS AVGYQPTLAT DLGGLQERIT TTKKGSITSV QAIYVPADDL
401: TDPAPATTFA HLDATTVLSR QISELGIYPA VDPLDSTSRM LSPHILGEDH YNTARGVQKV LQNYKNLQDI IAILGMDELS EDDKMTVARA RKIQRFLSQP
501: FHVAEVFTGA PGKYVDLKES INSFQGVLDG KYDDLSEQSF YMVGGIDEVI AKAEKIAKES AA

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.