Factsheet for Solyc10g055670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, nucleus, cytosol

Predictor Summary:

nucleus 1
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, unclear
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068704	Potato	cytosol	99.79	99.79
Solyc01g111760.2.1	Tomato	plastid	98.33	98.33
CDY01384	Canola	cytosol	87.27	96.31
VIT_03s0038g02760.t01	Wine grape	cytosol	97.7	95.9
GSMUA_Achr2P16710_001	Banana	cytosol	97.49	95.7
GSMUA_Achr7P09090_001	Banana	cytosol, plasma membrane	97.29	95.49
KXG20226	Sorghum	cytosol	96.66	95.07
Zm00001d036961_P004	Maize	plasma membrane, plastid	96.66	95.07
CDX73218	Canola	cytosol	95.82	95.03
TraesCS3D01G250900.1	Wheat	cytosol	96.66	94.88
Os01t0711000-01	Rice	plastid	96.66	94.88
KRG90658	Soybean	cytosol	96.66	94.88
Bra025804.1-P	Field mustard	cytosol	79.96	94.8
TraesCS3A01G250500.1	Wheat	extracellular	96.45	94.67
KRH36093	Soybean	endoplasmic reticulum	96.45	94.67
CDY54328	Canola	cytosol	96.03	94.65
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	96.24	94.47
TraesCS7A01G362000.1	Wheat	cytosol	96.24	94.47
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	96.24	94.47
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	96.24	94.47
TraesCS6B01G218100.1	Wheat	cytosol	96.24	94.47
TraesCS6A01G186300.1	Wheat	cytosol	96.24	94.47
TraesCS7D01G361000.1	Wheat	cytosol	96.24	94.47
CDY51327	Canola	cytosol	95.82	94.44
AT4G38510.5	Thale cress	cytosol	97.29	94.33
KRH40221	Soybean	nucleus	96.24	94.27
KRH00994	Soybean	cytosol	96.24	94.27
CDX87646	Canola	cytosol	96.03	94.26
Bra015797.1-P	Field mustard	cytosol	96.03	94.26
CDY31899	Canola	cytosol	95.62	94.24
CDX96645	Canola	cytosol	95.62	94.24
OQU84653	Sorghum	cytosol	95.82	94.06
CDY29363	Canola	cytosol	95.2	93.83
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	97.91	93.24
Bra012223.1-P	Field mustard	endoplasmic reticulum	91.44	92.99
Zm00001d046336_P001	Maize	cytosol	96.45	92.77
HORVU3Hr1G067000.1	Barley	cytosol	48.23	89.53
HORVU7Hr1G087190.1	Barley	plastid	96.45	87.67
HORVU3Hr1G067040.5	Barley	cytosol, plastid	96.66	87.36
HORVU6Hr1G039890.3	Barley	mitochondrion	96.45	84.93
TraesCS3B01G280000.2	Wheat	cytosol	94.99	83.33
Solyc12g055800.1.1	Tomato	plastid	25.68	19.74
Solyc12g042230.1.1	Tomato	cytosol	3.76	19.35
Solyc06g063330.2.1	Tomato	cytosol, unclear	25.05	19.26
Solyc02g091130.2.1	Tomato	unclear	20.46	17.79
Solyc05g008460.2.1	Tomato	plastid	19.83	17.06
Solyc04g007550.2.1	Tomato	plastid	19.62	16.73
Solyc01g007320.2.1	Tomato	plastid	21.09	16.58
Solyc04g039850.1.1	Tomato	cytosol	4.18	14.39

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600
UniProt:K4D1F7	HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114
ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc10g055670.1	EnsemblPlants:Solyc10g055670.1.1
TIGRFAMs:TIGR01040	UniParc:UPI00027695ED	InterPro:V-ATPase_su_B/beta	:	:	:

Description

No Description!

Coordinates

chr10:+:57176295..57185577

Molecular Weight (calculated)

53397.8 Da

IEP (calculated)

4.772

GRAVY (calculated)

-0.275

Length

479 amino acids

Sequence
(BLAST)

001: MEEGTLEVGM EYRTVSGVAG PLVILEKVKG PKYQEIVNIR LGDGTTRRGQ VLEVDGEKAV VQVFEGTSGI DNKYTTVQFT GEVLKTPVSL DMLGRIFNGS
101: GKPIDNGPPI LPEAYRDISG SSINPSERTY PEEMIQTGIS TIDVMNSIAR GQKIPLFSAA GLPHNEIAAQ ICRQAGLVKR LEKSENLLED SEADNFAIVF
201: AAMGVNMETA QFFKRDFEEN GSMERVTLFL NLANDPTIER IITPRIALTT AEYLAYECGK HVLVILTDMS SYADALREVS AAREEVPGRR GYPGYMYTDL
301: ATIYERAGRI EGRTGSITQI PILTMPNDDI THPTPDLTGY ITEGQIYIDR QLHNRQIYPP INVLPSLSRL MKSAIGEGMT RRDHADVSNQ LYANYAIGKD
401: VQAMKAVVGE EALSSEDLLY LEFLDKFERK FVSQGAYDTR NIFQSLDLAW TLLRIFPREL LHRIPAKTLD QYYSRDAPN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.