Factsheet for TraesCS3A01G250500.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G250900.1	Wheat	cytosol	99.8	99.8
Os01t0711000-01	Rice	plastid	97.54	97.54
Solyc01g111760.2.1	Tomato	plastid	95.49	97.29
PGSC0003DMT400068704	Potato	cytosol	94.88	96.66
KRG90658	Soybean	cytosol	96.52	96.52
TraesCS6A01G186300.1	Wheat	cytosol	96.52	96.52
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.67	96.45
KRH36093	Soybean	endoplasmic reticulum	96.31	96.31
KRH00994	Soybean	cytosol	96.31	96.11
TraesCS7A01G362000.1	Wheat	cytosol	96.11	96.11
KRH40221	Soybean	nucleus	96.11	95.91
VIT_03s0038g02760.t01	Wine grape	cytosol	95.7	95.7
GSMUA_Achr5P22160_001	Banana	cytosol	95.49	95.49
OQU84653	Sorghum	cytosol	95.29	95.29
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.49	92.64
HORVU3Hr1G067040.5	Barley	cytosol, plastid	99.59	91.7
PGSC0003DMT400008800	Potato	cytosol	95.9	89.31
TraesCS3B01G280000.2	Wheat	cytosol	97.54	87.18
GSMUA_Achr8P05550_001	Banana	cytosol	96.52	85.33
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	6.97	26.15
TraesCS7A01G489500.1	Wheat	plastid	25.41	20.16
TraesCS3A01G264700.1	Wheat	mitochondrion	20.49	18.15
TraesCS1A01G379000.1	Wheat	mitochondrion	20.29	17.9

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389
PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	EnsemblPlantsGene:TraesCS3A01G250500	EnsemblPlants:TraesCS3A01G250500.1	InterPro:V-ATPase_su_B/beta
TIGR:cd01135	:	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:469406718..469416302

Molecular Weight (calculated)

54317.0 Da

IEP (calculated)

4.826

GRAVY (calculated)

-0.251

Length

488 amino acids

Sequence
(BLAST)

001: MVVANGNVDM EEGTLEIGIE YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRK EKTDNILENA
201: EEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ FYSRDASH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.