CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG20226	Sorghum	cytosol	97.13	97.33
Solyc01g111760.2.1	Tomato	plastid	94.67	96.45
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.06	95.82
PGSC0003DMT400068704	Potato	cytosol	94.06	95.82
GSMUA_Achr5P22160_001	Banana	cytosol	95.7	95.7
TraesCS3D01G250900.1	Wheat	cytosol	95.49	95.49
Os01t0711000-01	Rice	plastid	95.49	95.49
TraesCS3A01G250500.1	Wheat	extracellular	95.29	95.29
KRG90658	Soybean	cytosol	95.08	95.08
KRH36093	Soybean	endoplasmic reticulum	94.88	94.88
KRH00994	Soybean	cytosol	94.88	94.68
KRH40221	Soybean	nucleus	94.88	94.68
VIT_03s0038g02760.t01	Wine grape	cytosol	94.67	94.67
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.49	92.64
PGSC0003DMT400008800	Potato	cytosol	95.29	88.74
HORVU3Hr1G067040.5	Barley	cytosol, plastid	95.49	87.92
GSMUA_Achr8P05550_001	Banana	cytosol	95.9	84.78
TraesCS3B01G280000.2	Wheat	cytosol	93.85	83.88
OQU86829	Sorghum	cytosol	6.56	23.02
EES04615	Sorghum	cytosol	25.41	19.97
EER90164	Sorghum	cytosol	25.41	19.97
OQU84606	Sorghum	cytosol	9.63	18.58
KXG22502	Sorghum	mitochondrion	20.49	18.08
KXG33146	Sorghum	mitochondrion	20.49	18.05

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	UniProt:A0A194YNQ1	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034
GO:GO:1902600	ProteinID:KXG29822.1	ProteinID:KXG29823.1	HAMAP:MF_00310	EnsemblPlants:OQU84653	ProteinID:OQU84653
ProteinID:OQU84653.1	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152
PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	EnsemblPlantsGene:SORBI_3004G094700	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI000220720E
InterPro:V-ATPase_su_B/beta	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:8185338..8190721

Molecular Weight (calculated)

54189.9 Da

IEP (calculated)

5.007

GRAVY (calculated)

-0.264

Length

488 amino acids

Sequence
(BLAST)

001: MGLAKDGAEL EEGSLEIGME YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKTL EKSAKHKESG
201: VEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VTQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ YYSRDATH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.