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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • mitochondrion 2
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plasma membrane
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d053765_P003 Maize cytosol 98.87 98.87
EER90164 Sorghum cytosol 98.23 98.23
GSMUA_Achr1P10520_001 Banana plasma membrane 95.49 95.49
GSMUA_Achr9P23040_001 Banana cytosol 95.17 95.17
GSMUA_Achr11P... Banana cytosol 95.01 95.01
Os02t0175400-01 Rice plasma membrane 94.36 94.36
TraesCS7D01G475900.2 Wheat cytosol 92.11 93.01
TraesCS7A01G489500.1 Wheat plastid 92.11 93.01
KRH46991 Soybean nucleus 92.91 92.62
KRH44667 Soybean nucleus 92.43 92.13
AT1G78900.1 Thale cress cytosol 92.27 91.97
VIT_09s0054g00890.t01 Wine grape extracellular 92.27 91.97
Solyc12g055800.1.1 Tomato plastid 92.27 91.97
PGSC0003DMT400074197 Potato cytosol 92.27 91.97
Bra003633.1-P Field mustard cytosol 92.11 91.81
PGSC0003DMT400068136 Potato cytosol 91.95 91.65
Solyc06g063330.2.1 Tomato cytosol, unclear 91.95 91.65
Bra008385.1-P Field mustard cytosol 86.63 91.5
Bra035074.1-P Field mustard cytosol 91.63 91.33
VIT_04s0008g02580.t01 Wine grape cytosol 92.59 91.13
TraesCS7B01G392600.1 Wheat plastid 93.24 85.4
HORVU7Hr1G109770.1 Barley cytosol, mitochondrion 86.96 67.08
CDX77882 Canola mitochondrion 12.88 37.04
KXG20226 Sorghum cytosol 19.97 25.46
OQU84653 Sorghum cytosol 19.97 25.41
KXG22502 Sorghum mitochondrion 20.61 23.15
KXG33146 Sorghum mitochondrion 20.45 22.92
OQU86829 Sorghum cytosol 4.67 20.86
OQU84606 Sorghum cytosol 7.73 18.97
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.10.1140.10Gene3D:2.40.30.20Gene3D:2.40.50.100MapMan:24.1.1.2.1
Gene3D:3.40.50.300EntrezGene:8076129InterPro:ATP-synth_a_XtnInterPro:ATP_synth_asu-like_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_CInterPro:ATPase_V1-cplx_asuInterPro:ATPase_a/bsu_ASUniProt:C5XW73ncoils:Coil
EnsemblPlants:EES04615ProteinID:EES04615ProteinID:EES04615.1GO:GO:0000166GO:GO:0000325GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0006139
GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0015991GO:GO:0015992
GO:GO:0016020GO:GO:0016787GO:GO:0033180GO:GO:0046034GO:GO:0046961GO:GO:1902600
InterPro:IPR023366InterPro:IPR024034HAMAP:MF_00309InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF02874
PFAM:PF16886ScanProsite:PS00152PANTHER:PTHR43607PANTHER:PTHR43607:SF3MetaCyc:PWY-7219EnsemblPlantsGene:SORBI_3004G060100
SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540unigene:Sbi.3751TIGRFAMs:TIGR01042UniParc:UPI0001A8564A
InterPro:V-ATPase_asuRefSeq:XP_002451639.1::::
Description
hypothetical protein
Coordinates
chr4:+:4812180..4818074
Molecular Weight (calculated)
68442.0 Da
IEP (calculated)
5.167
GRAVY (calculated)
-0.170
Length
621 amino acids
Sequence
(BLAST)
001: MAYGDRVTTF EDSEKESEYG YVRKVSGPVV VADGMGGAAM YELVRVGHDN LIGEIIRLEG DSATIQVYEE TAGLMVNDPV LRTRKPLSVE LGPGILGNIF
101: DGIQRPLKTI AIKSGDVYIP RGVSVPALDK DVLWEFQPKK LGVGDVITGG DLYATVFENT LMQHHVALPP GSMGKVSYIA PAGQYSLQDT VLELEFQGIK
201: KKFTMLQTWP VRSPRPVASK LAADTPLLTG QRVLDALFPS VLGGTCAIPG AFGCGKTVIS QALSKYSNSE AVVYVGCGER GNEMAEVLMD FPQLTMTLPD
301: GREESVMKRT TLVANTSNMP VAAREASIYT GITIAEYFRD MGYNVSMMAD STSRWAEALR EISGRLAEMP ADSGYPAYLA ARLASFYERA GKVKCLGSPD
401: RTGSVTIVGA VSPPGGDFSD PVTSATLSIV QVFWGLDKKL AQRKHFPSVN WLISYSKYSK ALESFYEKFD PDFIDIRTKA REVLQREDDL NEIVQLVGKD
501: ALAESDKITL ETAKLLREDY LAQNAFTPYD KFCPFYKSVW MMRNIIHFNT LANQAVERAA GTDGQKITYS VIKHRLGDLF YRLVSQKFED PAEGEEALVA
601: KFKKLYDDLT NGFRNLEDEA R
Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
Arabidopsis Description
VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.