Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003633.1-P | Field mustard | cytosol | 97.75 | 97.75 |
| CDX79274 | Canola | cytosol | 97.75 | 97.75 |
| CDY57944 | Canola | cytosol | 97.75 | 97.75 |
| Bra008385.1-P | Field mustard | cytosol | 91.81 | 97.28 |
| CDX87424 | Canola | cytosol | 97.27 | 97.27 |
| CDX88489 | Canola | cytosol | 97.27 | 97.27 |
| Bra035074.1-P | Field mustard | cytosol | 96.95 | 96.95 |
| CDY67023 | Canola | cytosol | 78.65 | 96.65 |
| PGSC0003DMT400068136 | Potato | cytosol | 94.06 | 94.06 |
| VIT_09s0054g00890.t01 | Wine grape | extracellular | 94.06 | 94.06 |
| Solyc06g063330.2.1 | Tomato | cytosol, unclear | 93.9 | 93.9 |
| Solyc12g055800.1.1 | Tomato | plastid | 93.74 | 93.74 |
| PGSC0003DMT400074197 | Potato | cytosol | 93.42 | 93.42 |
| KRH46991 | Soybean | nucleus | 93.26 | 93.26 |
| KRH44667 | Soybean | nucleus | 93.1 | 93.1 |
| EES04615 | Sorghum | cytosol | 91.97 | 92.27 |
| Zm00001d053765_P003 | Maize | cytosol | 91.97 | 92.27 |
| EER90164 | Sorghum | cytosol | 91.81 | 92.11 |
| Zm00001d015426_P001 | Maize | cytosol | 74.32 | 92.05 |
| Os06t0662000-01 | Rice | nucleus, plasma membrane | 90.85 | 91.29 |
| GSMUA_Achr1P10520_001 | Banana | plasma membrane | 90.85 | 91.14 |
| GSMUA_Achr11P... | Banana | cytosol | 90.53 | 90.82 |
| GSMUA_Achr9P23040_001 | Banana | cytosol | 90.37 | 90.66 |
| TraesCS7A01G489500.1 | Wheat | plastid | 89.09 | 90.24 |
| TraesCS7D01G475900.2 | Wheat | cytosol | 89.09 | 90.24 |
| HORVU6Hr1G069640.1 | Barley | cytosol, mitochondrion | 8.51 | 89.83 |
| Os02t0175400-01 | Rice | plasma membrane | 89.09 | 89.37 |
| TraesCS7B01G392600.1 | Wheat | plastid | 89.57 | 82.3 |
| Zm00001d015427_P001 | Maize | extracellular, plastid | 15.41 | 80.0 |
| HORVU7Hr1G109770.1 | Barley | cytosol, mitochondrion | 84.11 | 65.09 |
| AT1G76030.1 | Thale cress | cytosol | 19.9 | 25.51 |
| AT1G20260.1 | Thale cress | cytosol | 19.74 | 25.26 |
| AT4G38510.5 | Thale cress | cytosol | 19.9 | 25.1 |
| ATCG00480.1 | Thale cress | cytosol | 19.26 | 24.1 |
| AT5G08690.1 | Thale cress | mitochondrion | 19.42 | 21.76 |
| AT5G08670.1 | Thale cress | mitochondrion | 19.42 | 21.76 |
| AT5G08680.1 | Thale cress | mitochondrion | 19.42 | 21.65 |
Protein Annotations
| KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | Gene3D:1.10.1140.10 | Gene3D:2.40.30.20 | Gene3D:2.40.50.100 | MapMan:24.1.1.2.1 |
| Gene3D:3.40.50.300 | EntrezGene:844228 | UniProt:A0A178W720 | ProteinID:AAC83021.1 | ProteinID:AEE36171.1 | ProteinID:AEE36172.1 |
| EMBL:AK230248 | EMBL:AK317358 | ArrayExpress:AT1G78900 | EnsemblPlantsGene:AT1G78900 | RefSeq:AT1G78900 | TAIR:AT1G78900 |
| RefSeq:AT1G78900-TAIR-G | EnsemblPlants:AT1G78900.1 | TAIR:AT1G78900.1 | InterPro:ATP-synth_a_Xtn | InterPro:ATP_synth_asu-like_sf | InterPro:ATPase_F1/V1/A1_a/bsu_N |
| InterPro:ATPase_F1/V1/A1_a/bsu_N_sf | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:ATPase_F1/V1_b/a_C | InterPro:ATPase_V1-cplx_asu | InterPro:ATPase_a/bsu_AS | EMBL:AY059909 |
| EMBL:AY081296 | EMBL:AY085759 | EMBL:BT002589 | EMBL:BT008383 | ncoils:Coil | GO:GO:0000166 |
| GO:GO:0000325 | GO:GO:0002020 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005215 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005618 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0005886 |
| GO:GO:0006139 | GO:GO:0006810 | GO:GO:0006811 | GO:GO:0006950 | GO:GO:0007030 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009506 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009555 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015991 | GO:GO:0015992 |
| GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030312 | GO:GO:0033180 | GO:GO:0046034 |
| GO:GO:0046961 | GO:GO:0048046 | GO:GO:1902600 | InterPro:IPR023366 | InterPro:IPR024034 | HAMAP:MF_00309 |
| RefSeq:NP_001031299.1 | RefSeq:NP_178011.1 | UniProt:O23654 | ProteinID:OAP13521.1 | InterPro:P-loop_NTPase | PFAM:PF00006 |
| PFAM:PF02874 | PFAM:PF16886 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001170 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005020 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| ScanProsite:PS00152 | PANTHER:PTHR43607 | PANTHER:PTHR43607:SF3 | UniProt:Q0WLF6 | SUPFAM:SSF47917 | SUPFAM:SSF50615 |
| SUPFAM:SSF52540 | TIGRFAMs:TIGR01042 | EMBL:U65638 | UniParc:UPI0000000E4F | InterPro:V-ATPase_asu | Symbol:VHA-A |
| SEG:seg | : | : | : | : | : |
Description
VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
Coordinates
chr1:+:29660088..29665078
Molecular Weight (calculated)
68816.3 Da
IEP (calculated)
4.864
GRAVY (calculated)
-0.172
Length
623 amino acids
Sequence
(BLAST)
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.