Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY01384 | Canola | cytosol | 88.5 | 99.31 |
| AT1G76030.1 | Thale cress | cytosol | 97.95 | 98.15 |
| CDX96645 | Canola | cytosol | 97.74 | 97.94 |
| CDY54328 | Canola | cytosol | 97.54 | 97.74 |
| CDY51327 | Canola | cytosol | 97.54 | 97.74 |
| CDY31899 | Canola | cytosol | 97.54 | 97.74 |
| Bra025804.1-P | Field mustard | cytosol | 80.9 | 97.52 |
| CDY29363 | Canola | cytosol | 96.92 | 97.12 |
| Bra012223.1-P | Field mustard | endoplasmic reticulum | 92.81 | 95.97 |
| TraesCS6A01G186300.1 | Wheat | cytosol | 95.07 | 94.88 |
| TraesCS6B01G218100.1 | Wheat | cytosol | 95.07 | 94.88 |
| TraesCS6D01G173400.1 | Wheat | cytosol, nucleus, plastid, unclear | 95.07 | 94.88 |
| Zm00001d036961_P004 | Maize | plasma membrane, plastid | 94.87 | 94.87 |
| KXG20226 | Sorghum | cytosol | 94.87 | 94.87 |
| TraesCS7A01G362000.1 | Wheat | cytosol | 94.87 | 94.67 |
| TraesCS7B01G265500.1 | Wheat | golgi, nucleus, plastid | 94.87 | 94.67 |
| TraesCS7D01G361000.1 | Wheat | cytosol | 94.87 | 94.67 |
| Os06t0568200-01 | Rice | nucleus, plasma membrane, vacuole | 94.87 | 94.67 |
| AT4G38510.5 | Thale cress | cytosol | 95.48 | 94.13 |
| Zm00001d046336_P001 | Maize | cytosol | 94.87 | 92.77 |
| HORVU7Hr1G087190.1 | Barley | plastid | 95.07 | 87.86 |
| HORVU6Hr1G039890.3 | Barley | mitochondrion | 95.28 | 85.29 |
| AT1G78900.1 | Thale cress | cytosol | 25.26 | 19.74 |
| ATCG00480.1 | Thale cress | cytosol | 20.12 | 19.68 |
| AT5G08690.1 | Thale cress | mitochondrion | 20.94 | 18.35 |
| AT5G08670.1 | Thale cress | mitochondrion | 20.94 | 18.35 |
| AT5G08680.1 | Thale cress | mitochondrion | 20.94 | 18.25 |
Protein Annotations
| KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | MapMan:24.1.1.2.2 | Gene3D:3.40.50.12240 | EntrezGene:838614 | UniProt:A0A178WCF6 |
| ProteinID:AAF88162.1 | ProteinID:AEE29955.1 | EMBL:AK176408 | EMBL:AK176641 | EMBL:AK176750 | EMBL:AK176915 |
| ArrayExpress:AT1G20260 | EnsemblPlantsGene:AT1G20260 | RefSeq:AT1G20260 | TAIR:AT1G20260 | RefSeq:AT1G20260-TAIR-G | EnsemblPlants:AT1G20260.1 |
| TAIR:AT1G20260.1 | InterPro:ATPase_F1/V1/A1_a/bsu_N | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:ATPase_V1-cplx_bsu | InterPro:ATPase_a/bsu_AS | EMBL:AY062616 |
| Unigene:At.24526 | EMBL:BT000150 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015991 |
| GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030835 | GO:GO:0033180 |
| GO:GO:0046034 | GO:GO:0051015 | GO:GO:0051017 | GO:GO:0051693 | GO:GO:1902600 | HAMAP:MF_00310 |
| RefSeq:NP_173451.5 | ProteinID:OAP15481.1 | InterPro:P-loop_NTPase | PFAM:PF00006 | PFAM:PF02874 | PIRSF:PIRSF039114 |
| PO:PO:0000005 | PO:PO:0000293 | PO:PO:0001170 | PO:PO:0007131 | PO:PO:0020030 | PO:PO:0025281 |
| ScanProsite:PS00152 | PANTHER:PTHR43389 | PANTHER:PTHR43389:SF6 | UniProt:Q8W4E2 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01040 |
| UniParc:UPI00000AC4DE | InterPro:V-ATPase_su_B/beta | : | : | : | : |
Description
VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
Coordinates
chr1:+:7016599..7020690
Molecular Weight (calculated)
54315.0 Da
IEP (calculated)
4.734
GRAVY (calculated)
-0.250
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.