Factsheet for Bra025804.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29363	Canola	cytosol	99.26	82.51
AT1G20260.1	Thale cress	cytosol	97.52	80.9
Bra015797.1-P	Field mustard	cytosol	97.28	80.53
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.8	79.96
Solyc01g111760.2.1	Tomato	plastid	94.8	79.96
PGSC0003DMT400068704	Potato	cytosol	94.8	79.96
Zm00001d036961_P004	Maize	plasma membrane, plastid	96.04	79.67
KXG20226	Sorghum	cytosol	96.04	79.67
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	96.04	79.51
TraesCS6B01G218100.1	Wheat	cytosol	96.04	79.51
TraesCS6A01G186300.1	Wheat	cytosol	96.04	79.51
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	96.04	79.51
TraesCS7D01G361000.1	Wheat	cytosol	95.79	79.3
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	95.79	79.3
TraesCS7A01G362000.1	Wheat	cytosol	95.79	79.3
Bra012223.1-P	Field mustard	endoplasmic reticulum	92.08	78.98
VIT_03s0038g02760.t01	Wine grape	cytosol	94.8	78.48
Zm00001d046336_P001	Maize	cytosol	96.29	78.11
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.3	76.54
HORVU7Hr1G087190.1	Barley	plastid	96.04	73.62
PGSC0003DMT400008800	Potato	cytosol	94.55	72.9
HORVU6Hr1G039890.3	Barley	mitochondrion	96.29	71.51
Bra005634.1-P	Field mustard	cytosol	16.34	43.42
Bra008385.1-P	Field mustard	cytosol	26.98	18.54
Bra035074.1-P	Field mustard	cytosol	27.72	17.98
Bra003633.1-P	Field mustard	cytosol	27.72	17.98
Bra006013.1-P	Field mustard	mitochondrion	22.52	16.43
Bra028648.1-P	Field mustard	mitochondrion	22.52	16.4
Bra009363.1-P	Field mustard	mitochondrion	22.52	16.4
Bra009360.1-P	Field mustard	mitochondrion	22.03	16.09
Bra028649.1-P	Field mustard	mitochondrion	22.03	15.78
Bra006014.1-P	Field mustard	mitochondrion	22.52	12.33

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:Bra025804	EnsemblPlants:Bra025804.1	EnsemblPlants:Bra025804.1-P	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015992	GO:GO:0046034	GO:GO:1902600	UniProt:M4EAJ6	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	SUPFAM:SSF52540
UniParc:UPI000253EF52	InterPro:V-ATPase_su_B/beta	:	:	:	:

Description

AT1G76030 (E=2e-157) | vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit

Coordinates

chrA06:+:8089456..8092456

Molecular Weight (calculated)

45159.2 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.228

Length

404 amino acids

Sequence
(BLAST)

001: MVAAGIDMDE GALEIGMEYR TVSGVAGPLV ILEKVKGPKY QEIVNIRLGD GSMRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSQDML
101: GRIFNGSGKP IDNGPPILPE AYLDISAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA
201: LREVSAAREE VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI
301: GEGMTRRDHS DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVMQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR
401: DATS

Best Arabidopsis Sequence Match ( AT1G20260.1 )
(BLAST)

001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS

Arabidopsis Description

VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.