Factsheet for Bra015797.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra025613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	Bra025613.1-P	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87646	Canola	cytosol	100.0	100.0
CDX73218	Canola	cytosol	98.36	99.38
AT1G76030.1	Thale cress	cytosol	98.57	98.97
Bra025804.1-P	Field mustard	cytosol	80.53	97.28
Solyc01g111760.2.1	Tomato	plastid	94.47	96.24
PGSC0003DMT400068704	Potato	cytosol	94.26	96.03
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.26	96.03
Bra012223.1-P	Field mustard	endoplasmic reticulum	91.8	95.12
TraesCS6B01G218100.1	Wheat	cytosol	94.88	94.88
TraesCS6A01G186300.1	Wheat	cytosol	94.88	94.88
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	94.88	94.88
VIT_03s0038g02760.t01	Wine grape	cytosol	94.67	94.67
KXG20226	Sorghum	cytosol	94.47	94.66
Zm00001d036961_P004	Maize	plasma membrane, plastid	94.47	94.66
TraesCS7A01G362000.1	Wheat	cytosol	94.47	94.47
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	94.47	94.47
TraesCS7D01G361000.1	Wheat	cytosol	94.47	94.47
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	94.47	94.47
Zm00001d046336_P001	Maize	cytosol	94.47	92.57
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	94.88	92.05
PGSC0003DMT400008800	Potato	cytosol	94.47	87.98
HORVU7Hr1G087190.1	Barley	plastid	94.67	87.67
HORVU6Hr1G039890.3	Barley	mitochondrion	95.08	85.29
Bra005634.1-P	Field mustard	cytosol	13.73	44.08
Bra008385.1-P	Field mustard	cytosol	24.8	20.58
Bra035074.1-P	Field mustard	cytosol	25.61	20.06
Bra003633.1-P	Field mustard	cytosol	25.61	20.06
Bra006013.1-P	Field mustard	mitochondrion	21.11	18.59
Bra028648.1-P	Field mustard	mitochondrion	21.11	18.56
Bra009363.1-P	Field mustard	mitochondrion	21.11	18.56
Bra009360.1-P	Field mustard	mitochondrion	20.7	18.26
Bra028649.1-P	Field mustard	mitochondrion	20.9	18.09
Bra006014.1-P	Field mustard	mitochondrion	21.11	13.96

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:Bra015797	EnsemblPlants:Bra015797.1	EnsemblPlants:Bra015797.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005794
GO:GO:0005886	GO:GO:0006139	GO:GO:0006357	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0010255	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0016043
GO:GO:0019725	GO:GO:0030835	GO:GO:0032991	GO:GO:0033180	GO:GO:0043234	GO:GO:0046034
GO:GO:0046686	GO:GO:0051015	GO:GO:0051017	GO:GO:0051693	GO:GO:1902600	UniProt:M4DH20
HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152
PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI0002541FF7	InterPro:V-ATPase_su_B/beta

Description

AT1G76030 (E=2e-278) | vacuolar ATP synthase subunit B / V-ATPase B subunit / vacuolar proton pump B subunit / V-ATPase 57 kDa subunit

Coordinates

chrA07:+:20812983..20815446

Molecular Weight (calculated)

54287.0 Da

IEP (calculated)

4.729

GRAVY (calculated)

-0.245

Length

488 amino acids

Sequence
(BLAST)

001: MGANDIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TADLLEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRIALTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRKD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTTTT

Best Arabidopsis Sequence Match ( AT1G76030.1 )
(BLAST)

001: MGTNDLDIEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TVDLLEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRIALTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRKD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTS

Arabidopsis Description

VHA-B1V-type proton ATPase subunit B1 [Source:UniProtKB/Swiss-Prot;Acc:P11574]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.