Factsheet for TraesCS6D01G173400.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid, nucleus, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22736107
unclear: 25769308
nucleus: 26579155

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G377600.1
TraesCS7B01G279300.1
TraesCS7D01G374400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	TraesCS7A01G377600.1	AT5G35410.1	17875927
AT1G76030.1	TraesCS7B01G279300.1	AT5G35410.1	17875927
AT1G76030.1	TraesCS7D01G374400.2	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G218100.1	Wheat	cytosol	100.0	100.0
TraesCS6A01G186300.1	Wheat	cytosol	100.0	100.0
TraesCS7D01G361000.1	Wheat	cytosol	97.95	97.95
Solyc01g111760.2.1	Tomato	plastid	95.29	97.08
CDY01384	Canola	cytosol	85.86	96.54
TraesCS3D01G250900.1	Wheat	cytosol	96.31	96.31
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.47	96.24
PGSC0003DMT400068704	Potato	cytosol	94.47	96.24
Bra025804.1-P	Field mustard	cytosol	79.51	96.04
CDX73218	Canola	cytosol	94.67	95.65
VIT_03s0038g02760.t01	Wine grape	cytosol	95.08	95.08
AT1G20260.1	Thale cress	cytosol	94.88	95.07
AT1G76030.1	Thale cress	cytosol	94.67	95.06
Bra015797.1-P	Field mustard	cytosol	94.88	94.88
CDX87646	Canola	cytosol	94.88	94.88
CDY54328	Canola	cytosol	94.47	94.86
CDY51327	Canola	cytosol	94.26	94.65
CDY31899	Canola	cytosol	94.26	94.65
CDX96645	Canola	cytosol	94.06	94.44
CDY29363	Canola	cytosol	93.65	94.03
Bra012223.1-P	Field mustard	endoplasmic reticulum	89.96	93.21
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.29	92.45
HORVU6Hr1G039890.3	Barley	mitochondrion	99.59	89.34
PGSC0003DMT400008800	Potato	cytosol	95.9	89.31
TraesCS1D01G181600.1	Wheat	cytosol	16.6	23.14
TraesCS6D01G182000.1	Wheat	cytosol	6.15	20.55
TraesCS2D01G284400.1	Wheat	plastid	20.7	20.28
TraesCS7D01G475900.2	Wheat	cytosol	25.41	20.16
TraesCS2D01G584400.2	Wheat	cytosol	19.06	19.54
TraesCS5D01G010300.1	Wheat	cytosol	5.74	18.79
TraesCS3D01G264800.2	Wheat	golgi	20.08	17.75
TraesCS3D01G338500.1	Wheat	cytosol	4.92	17.65
TraesCS1D01G136000.1	Wheat	cytosol, golgi	12.3	17.6
TraesCS1D01G171700.1	Wheat	cytosol	7.99	16.88
TraesCS6D01G181900.1	Wheat	cytosol	7.17	16.59

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389
PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	EnsemblPlantsGene:TraesCS6D01G173400	EnsemblPlants:TraesCS6D01G173400.1	InterPro:V-ATPase_su_B/beta
TIGR:cd01135	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:161971994..161978890

Molecular Weight (calculated)

54155.8 Da

IEP (calculated)

4.884

GRAVY (calculated)

-0.259

Length

488 amino acids

Sequence
(BLAST)

001: MGLAKDGAEM EEGTLEIGIE YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EQSKHAAEGG
201: EEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ FYSRDATH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.