Factsheet for TraesCS2D01G284400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

plastid: 18071923
plastid: 22056444
plastid: 22160430
plastid: 22736107
golgi: 25769308
unclear: 25769308
nucleus: 26579155
plastid: 28542341

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 28542341 doi

K Shi, J Gu, H Guo, L Zhao, Y Xie, H Xiong, J Li, S Zhao, X Song, L Liu

National Key Facility for Crop Gene Resources and Genetic Improvement, Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, Beijing, China., School of Life Sciences, Qingdao Agricultural University, Qingdao, Shandong, China.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

msms PMID: 22056444 doi

Q Meng, L Rao, X Xiang, C Zhou, X Zhang, Y Pan

College of Bioscience and Biotechnology, Hunan Agricultural University, Changsha, China.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50762	Barley	plastid	98.8	98.8
HORVU6Hr1G049250.6	Barley	cytosol	98.8	98.8
TraesCS2D01G584400.2	Wheat	cytosol	93.98	98.32
CAA34003	Rice	extracellular	96.99	96.99
TraesCS1D01G181600.1	Wheat	cytosol	68.07	96.86
TraesCS5D01G010300.1	Wheat	cytosol	28.92	96.64
Zm00001d006403_P001	Maize	plastid	96.39	96.39
GRMZM5G808402_P01	Maize	cytosol, mitochondrion, plastid	96.39	96.39
TraesCS1D01G171700.1	Wheat	cytosol	41.97	90.48
TraesCS3D01G338500.1	Wheat	cytosol	24.5	89.71
TraesCS6D01G181900.1	Wheat	cytosol	37.15	87.68
TraesCS6D01G182000.1	Wheat	cytosol	19.88	67.81
TraesCS1D01G136000.1	Wheat	cytosol, golgi	45.98	67.16
TraesCS3D01G264800.2	Wheat	golgi	64.86	58.51
TraesCS3D01G250900.1	Wheat	cytosol	20.48	20.9
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	20.28	20.7
TraesCS7D01G361000.1	Wheat	cytosol	20.08	20.49
TraesCS7D01G475900.2	Wheat	cytosol	23.69	19.19

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:1.1.9.2.2	Gene3D:1.10.1140.10	Gene3D:2.40.10.170	Gene3D:3.40.50.300
InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C
InterPro:ATPase_a/bsu_AS	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:1902600
InterPro:IPR024034	HAMAP:MF_01347	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	ScanProsite:PS00152
PANTHER:PTHR15184	PANTHER:PTHR15184:SF43	SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540
TIGRFAMs:TIGR01039	EnsemblPlantsGene:TraesCS2D01G284400	EnsemblPlants:TraesCS2D01G284400.1	TIGR:cd01133	:	:

Description

No Description!

Coordinates

chr2D:+:359630619..359632115

Molecular Weight (calculated)

53905.8 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.083

Length

498 amino acids

Sequence
(BLAST)

001: MRTNPTTSPP GVSTIEEKST GRIDQIIGPV LDVTFPPGKL PYIYNALVVQ SRDTADKQIN VTCEVQQLLG NNRVRAVAMS ATDGLMRGME VIDTGAPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDSSATF PIHRSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEKNIEES KVALVYGQMN EPPGARMRVG LTALTMTEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGSLQ ERIASTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLASKG IYPAVDPLDS TSTMLQPRIV GNEHYETAQR VKETLQRYEE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVA LAETIRGFQL ILSGELDSLP EQAFYLVGNI DEASTKAITL EEENKSKK

Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)

001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK

Arabidopsis Description

ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.