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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • cytosol 4
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plastid: 15682463
plastid: 16758444
plastid: 21440687
plasma membrane: 29385242
msms PMID: 16758444 doi
B Granvogl, V Reisinger, LA Eichacker
Department für Biologie I, Ludwig-Maximilians-Universität, München, Germany.
msms PMID: 15682463 doi
C Ciambella, P Roepstorff, EM Aro, L Zolla
Department of Environmental Sciences, University of Tuscia, Viterbo, Italy.
msms PMID: 29385242 doi
K Witzel, A Matros, ALB Møller, E Ramireddy, C Finnie, M Peukert, T Rutten, A Herzog, G Kunze, M Melzer, S Kaspar-Schoenefeld, T Schmülling, B Svensson, HP Mock
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
msms PMID: 21440687 doi
M Plöscher, V Reisinger, LA Eichacker
TRION Pharma GmbH, Munich, Germany.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU0Hr1G029780.1 Barley cytosol 35.54 100.0
HORVU0Hr1G031360.2 Barley cytosol 64.46 100.0
HORVU6Hr1G049250.6 Barley cytosol 100.0 100.0
HORVU0Hr1G033790.1 Barley cytosol 25.9 100.0
TraesCS2D01G284400.1 Wheat plastid 98.8 98.8
HORVU2Hr1G028800.2 Barley cytosol 14.26 98.61
CAA34003 Rice extracellular 97.39 97.39
GRMZM5G808402_P01 Maize cytosol, mitochondrion, plastid 96.79 96.79
Zm00001d006403_P001 Maize plastid 96.79 96.79
HORVU3Hr1G053770.2 Barley cytosol 39.76 95.65
HORVU0Hr1G030780.2 Barley mitochondrion 28.11 93.96
HORVU0Hr1G033050.1 Barley cytosol 41.37 93.21
HORVU5Hr1G064710.3 Barley cytosol 25.3 80.25
HORVU0Hr1G026070.2 Barley mitochondrion 36.14 72.87
HORVU5Hr1G064690.5 Barley cytosol 34.14 71.13
HORVU4Hr1G016830.2 Barley cytosol, mitochondrion, nucleus 12.85 63.37
HORVU3Hr1G063590.2 Barley plasma membrane 65.26 58.98
HORVU1Hr1G083840.2 Barley mitochondrion 65.06 58.48
HORVU3Hr1G067040.5 Barley cytosol, plastid 20.68 19.43
HORVU7Hr1G087190.1 Barley plastid 20.28 19.17
HORVU6Hr1G039890.3 Barley mitochondrion 20.48 18.75
HORVU6Hr1G069640.1 Barley cytosol, mitochondrion 2.21 18.64
HORVU3Hr1G067000.1 Barley cytosol 9.64 18.6
HORVU7Hr1G109770.1 Barley cytosol, mitochondrion 23.29 14.41
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.2Gene3D:1.10.1140.10Gene3D:2.40.10.170Gene3D:3.40.50.300
EntrezGene:4525186InterPro:AAA+_ATPaseEnsemblPlants:AGP50762EnsemblPlantsGene:AGP50762ProteinID:AGP50762ProteinID:AGP50762.1
ProteinID:AMA20253.1InterPro:ATP_synth_F1_bsuInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_C
InterPro:ATPase_a/bsu_ASGO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488
GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139
GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015986
GO:GO:0015992GO:GO:0016020GO:GO:0016787GO:GO:0045261GO:GO:0046034GO:GO:0046933
GO:GO:0099132GO:GO:1902600InterPro:IPR024034ENA:KC912687.1:CDS:complement(52115..53611)HAMAP:MF_01347InterPro:P-loop_NTPase
PFAM:PF00006PFAM:PF02874ScanProsite:PS00152PANTHER:PTHR15184PANTHER:PTHR15184:SF43MetaCyc:PWY-7219
GO:S4Z0F2UniProt:S4Z0F2SMART:SM00382SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540
TIGRFAMs:TIGR01039UniParc:UPI0000E8A896RefSeq:YP_874660.1:::
Description
atpBATP synthase CF1 beta subunit
Coordinates
chrPt:-:52115..53611
Molecular Weight (calculated)
53877.7 Da
IEP (calculated)
4.910
GRAVY (calculated)
-0.094
Length
498 amino acids
Sequence
(BLAST)
001: MRTNPTTSRP GVSTSEEKST GRIDQIIGPV LDVTFPPGKL PYIYNALVVQ SRDTADKQIN VTCEVQQLLG NNRVRAVAMS ATDGLMRGME VIDTGAPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDSSATF PIHRSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEKNIEES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGSLQ ERIASTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLASKG IYPAVDPLDS TSTMLQPRIV GNEHYETAQR VKETLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVA LAETIRGFQL ILSGELDGLP EQAFYLVGNI DEASTKAITL EEENKSQK
Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)
001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
Arabidopsis Description
ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.