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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular

Predictor Summary:
  • cytosol 3
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:extracellular
Any Predictor:cytosol, mitochondrion
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
extracellular: 18986194
nucleus: 24133045
extracellular: 25047395
plastid: 27126603
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 25047395 doi
JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID: 27126603 doi
Y Wang, K Ji, S Shen, H Chen
Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: chenh@ibcas.ac.cn., Key Laboratory of Research and Development for Resource Plant, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China; University of Chinese Academy of Sciences, Beijing 100049, China.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
msms PMID: 18986194 doi
YH Jung, SH Jeong, SH Kim, R Singh, JE Lee, YS Cho, GK Agrawal, R Rakwal, NS Jwa
Department of Molecular Biology, Sejong University, Gunja-dong, Seoul 143-747, South Korea.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os10t0355800-00 Rice cytosol, extracellular, plastid 84.14 99.76
Os12t0207500-00 Rice extracellular, plastid 68.67 98.84
GRMZM5G808402_P01 Maize cytosol, mitochondrion, plastid 97.39 97.39
Zm00001d006403_P001 Maize plastid 97.39 97.39
HORVU6Hr1G049250.6 Barley cytosol 97.39 97.39
AGP50762 Barley plastid 97.39 97.39
TraesCS2D01G284400.1 Wheat plastid 96.99 96.99
TraesCS1D01G181600.1 Wheat cytosol 67.87 96.57
TraesCS2D01G584400.2 Wheat cytosol 92.17 96.43
HORVU0Hr1G033050.1 Barley cytosol 40.76 91.86
Os06t0120732-00 Rice cytosol 29.12 86.31
HORVU0Hr1G026070.2 Barley mitochondrion 35.54 71.66
HORVU5Hr1G064690.5 Barley cytosol 33.73 70.29
TraesCS1D01G136000.1 Wheat cytosol, golgi 45.58 66.57
Os05t0553000-02 Rice mitochondrion 65.46 59.06
Os01t0711000-01 Rice plastid 20.48 20.9
Os06t0568200-01 Rice nucleus, plasma membrane, vacuole 20.28 20.7
Os06t0662000-01 Rice nucleus, plasma membrane 24.1 19.35
Os02t0175400-01 Rice plasma membrane 23.9 19.16
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.2Gene3D:1.10.1140.10Gene3D:2.40.10.170Gene3D:3.40.50.300
InterPro:AAA+_ATPaseInterPro:ATP_synth_F1_bsuInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_C
InterPro:ATPase_a/bsu_ASEnsemblPlants:CAA34003EnsemblPlantsGene:CAA34003ProteinID:CAA34003ProteinID:CAA34003.1ncoils:Coil
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524
GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006139GO:GO:0006754
GO:GO:0006810GO:GO:0006811GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009507
GO:GO:0009535GO:GO:0009536GO:GO:0009579GO:GO:0009987GO:GO:0015986GO:GO:0016020
GO:GO:0016787GO:GO:0045261GO:GO:0046034GO:GO:0046933GO:GO:0099132GO:GO:1902600
InterPro:IPR024034HAMAP:MF_01347InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF02874ScanProsite:PS00152
PANTHER:PTHR15184PANTHER:PTHR15184:SF43MetaCyc:PWY-7219Reactome:R-HSA-1268020Reactome:R-HSA-163210Reactome:R-HSA-2151201
Reactome:R-HSA-8949613SMART:SM00382SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR01039
UniParc:UPI000012646A:::::
Description
No Description!
Coordinates
chrPt:-:51814..53310
Molecular Weight (calculated)
54017.1 Da
IEP (calculated)
5.275
GRAVY (calculated)
-0.102
Length
498 amino acids
Sequence
(BLAST)
001: MRTNPTTSRP GVSTIEEKST GRIDQIIGPV LDVTFPRGKL PYIYNALVVK SRDTDGKQIN VTCEVQQLLG NNRVRAVAMS ATDGLMRGME VIDTGAPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTSATF PIHRSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEKNLEES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGSLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLASKG IYPAVDPLDS TSTMLQPRIV GNEHYETAQR VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFQL ILSGELDGLP EQAFYLVGNI DEASTKAINL EEENKLKK
Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)
001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
Arabidopsis Description
ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.