Factsheet for HORVU6Hr1G049250.6

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AGP50762	Barley	plastid	100.0	100.0
HORVU0Hr1G029780.1	Barley	cytosol	35.54	100.0
HORVU0Hr1G031360.2	Barley	cytosol	64.46	100.0
HORVU0Hr1G033790.1	Barley	cytosol	25.9	100.0
TraesCS2D01G284400.1	Wheat	plastid	98.8	98.8
HORVU2Hr1G028800.2	Barley	cytosol	14.26	98.61
CAA34003	Rice	extracellular	97.39	97.39
Zm00001d006403_P001	Maize	plastid	96.79	96.79
GRMZM5G808402_P01	Maize	cytosol, mitochondrion, plastid	96.79	96.79
HORVU3Hr1G053770.2	Barley	cytosol	39.76	95.65
HORVU0Hr1G030780.2	Barley	mitochondrion	28.11	93.96
HORVU0Hr1G033050.1	Barley	cytosol	41.37	93.21
HORVU5Hr1G064710.3	Barley	cytosol	25.3	80.25
HORVU0Hr1G026070.2	Barley	mitochondrion	36.14	72.87
HORVU5Hr1G064690.5	Barley	cytosol	34.14	71.13
HORVU4Hr1G016830.2	Barley	cytosol, mitochondrion, nucleus	12.85	63.37
HORVU3Hr1G063590.2	Barley	plasma membrane	65.26	58.98
HORVU1Hr1G083840.2	Barley	mitochondrion	65.06	58.48
HORVU3Hr1G067040.5	Barley	cytosol, plastid	20.68	19.43
HORVU7Hr1G087190.1	Barley	plastid	20.28	19.17
HORVU6Hr1G039890.3	Barley	mitochondrion	20.48	18.75
HORVU6Hr1G069640.1	Barley	cytosol, mitochondrion	2.21	18.64
HORVU3Hr1G067000.1	Barley	cytosol	9.64	18.6
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	23.29	14.41

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:1.1.9.2.2	Gene3D:1.10.1140.10	Gene3D:2.40.10.170	Gene3D:3.40.50.300
EntrezGene:4525185	EntrezGene:4525186	InterPro:AAA+_ATPase	ProteinID:AGP50762.1	ProteinID:AMA20253.1	InterPro:ATP_synth_F1_bsu
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:0099132
GO:GO:1902600	EnsemblPlantsGene:HORVU6Hr1G049250	EnsemblPlants:HORVU6Hr1G049250.6	InterPro:IPR024034	HAMAP:MF_01347	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF43	UniProt:S4Z0F2
SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039	UniParc:UPI0000E8A896
RefSeq:YP_874660.1	:	:	:	:	:

Description

ATP synthase subunit beta, chloroplastic [Source:UniProtKB/TrEMBL;Acc:S4Z0F2]

Coordinates

chrchr6H:-:299512573..299514069

Molecular Weight (calculated)

53877.7 Da

IEP (calculated)

4.910

GRAVY (calculated)

-0.094

Length

498 amino acids

Sequence
(BLAST)

001: MRTNPTTSRP GVSTSEEKST GRIDQIIGPV LDVTFPPGKL PYIYNALVVQ SRDTADKQIN VTCEVQQLLG NNRVRAVAMS ATDGLMRGME VIDTGAPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDSSATF PIHRSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEKNIEES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNKQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGSLQ ERIASTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLASKG IYPAVDPLDS TSTMLQPRIV GNEHYETAQR VKETLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVA LAETIRGFQL ILSGELDGLP EQAFYLVGNI DEASTKAITL EEENKSQK

Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)

001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK

Arabidopsis Description

ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.