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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, nucleus

Predictor Summary:
  • cytosol 3
  • vacuole 1
  • mitochondrion 2
  • plasma membrane 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, plasma membrane
Any Predictor:cytosol, mitochondrion, plasma membrane, plastid, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plasma membrane
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 vacuole: 23894405
plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
plastid: 21433289
nucleus: 24133045
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503
plasma membrane: 28056797
gfp PMID: 23894405 doi
H Zhang, X Niu, J Liu, F Xiao, S Cao, Y Liu
School of Life Science, Chongqing University, Chongqing, China.
msms PMID: 24133045 doi
DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty
National Institute of Plant Genome Research, New Delhi, India.
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 28056797 doi
N Yang, T Wang
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EER90164 Sorghum cytosol 97.58 97.42
GSMUA_Achr1P10520_001 Banana plasma membrane 94.84 94.69
GSMUA_Achr11P... Banana cytosol 94.52 94.36
Os02t0175400-01 Rice plasma membrane 94.19 94.04
GSMUA_Achr9P23040_001 Banana cytosol 94.03 93.88
Solyc12g055800.1.1 Tomato plastid 91.94 91.49
PGSC0003DMT400074197 Potato cytosol 91.94 91.49
KRH46991 Soybean nucleus 91.77 91.33
AT1G78900.1 Thale cress cytosol 91.29 90.85
VIT_09s0054g00890.t01 Wine grape extracellular 91.29 90.85
Solyc06g063330.2.1 Tomato cytosol, unclear 91.29 90.85
KRH44667 Soybean nucleus 91.29 90.85
PGSC0003DMT400068136 Potato cytosol 91.29 90.85
Bra003633.1-P Field mustard cytosol 90.81 90.37
Bra008385.1-P Field mustard cytosol 85.65 90.31
Bra035074.1-P Field mustard cytosol 90.65 90.21
VIT_04s0008g02580.t01 Wine grape cytosol 91.45 89.86
CDX77882 Canola mitochondrion 12.42 35.65
Os12t0207500-00 Rice extracellular, plastid 15.32 27.46
Os10t0355800-00 Rice cytosol, extracellular, plastid 17.58 25.95
Os01t0711000-01 Rice plastid 20.16 25.61
Os06t0568200-01 Rice nucleus, plasma membrane, vacuole 19.84 25.2
Os06t0120732-00 Rice cytosol 6.77 25.0
CAA34003 Rice extracellular 19.35 24.1
Os05t0553000-02 Rice mitochondrion 20.32 22.83
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.10.1140.10Gene3D:2.40.30.20Gene3D:2.40.50.100MapMan:24.1.1.2.1
Gene3D:3.40.50.300EntrezGene:4341751InterPro:ATP-synth_a_XtnInterPro:ATP_synth_asu-like_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_CInterPro:ATPase_V1-cplx_asuInterPro:ATPase_a/bsu_ASProteinID:BAD45853.1ProteinID:BAD46429.1
ProteinID:BAF20194.1ProteinID:BAS98992.1ncoils:CoilProteinID:EEE66168.1GO:GO:0000166GO:GO:0000325
GO:GO:0003674GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005886
GO:GO:0006139GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0015991
GO:GO:0016020GO:GO:0016787GO:GO:0033180GO:GO:0046034GO:GO:0046961GO:GO:1902600
InterPro:IPR023366InterPro:IPR024034HAMAP:MF_00309EnsemblPlantsGene:Os06g0662000EnsemblPlants:Os06t0662000-01InterPro:P-loop_NTPase
PFAM:PF00006PFAM:PF02874PFAM:PF16886ScanProsite:PS00152PANTHER:PTHR43607PANTHER:PTHR43607:SF3
UniProt:Q651T8SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540TIGRFAMs:TIGR01042UniParc:UPI000043A424
InterPro:V-ATPase_asuRefSeq:XP_015643806.1::::
Description
PREMATURE LEAF SENESCENCE 1Vacuolar-type H+-ATPase subunit A1, Premature leaf senescence and seed dormancy, Regulation of stomatal aperture and density (Os06t0662000-01)
Coordinates
chr6:-:27286319..27292847
Molecular Weight (calculated)
68472.9 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.192
Length
620 amino acids
Sequence
(BLAST)
001: MSYDRVTTFE DSEKESEYGY VRKVSGPVVV ADGMGGAAMY ELVRVGNDNL IGEIIRLEGD SATIQVYEET AGLMVNDPVL RTRKPLSVEL GPGILGNIFD
101: GIQRPLKTIA IKSGDVYIPR GVSVPALDKD QLWDFEPKKL GVGDAITGGD LYATVFENTL MKHHVALPPG SMGKISYIAP AGQYSLQDTV LELEFQGIKK
201: QFTMLQTWPV RSPRPVSSKL AADTPLLTGQ RVLDALFPSV LGGTCAIPGA FGCGKTVISQ ALSKYSNSEA VVYVGCGERG NEMAEVLMDF PQLTMTLPDG
301: REESVMKRTT LVANTSNMPV AAREASIYTG ITIAEYFRDM GYNVSMMADS TSRWAEALRE ISGRLAEMPA DSGYPAYLAA RLASFYERAG KVKCLGSPDR
401: TGSVTIVGAV SPPGGDFSDP VTSATLSIVQ VFWGLDKKLA QRKHFPSVNW LISYSKYSKA LESFYEKFDQ DFIDIRTKAR EVLQREDDLN EIVQLVGKDA
501: LAESDKITLE TAKLLREDYL AQNAFTPYDK FCPFYKSVWM MRNIIHFNTL ANQAVERAAN ADGQKITYSV IKHRMGDLFY RLVSQKFEDP AEGEDVLVAK
601: FQKLYDDLTT GFRNLEDEAR
Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
Arabidopsis Description
VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.