CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015427_P001	Maize	extracellular, plastid	8.8	15.83
EES04615	Sorghum	cytosol	37.04	12.88
CDY57944	Canola	cytosol	37.04	12.84
CDX79274	Canola	cytosol	37.04	12.84
Zm00001d053765_P003	Maize	cytosol	36.57	12.72
EER90164	Sorghum	cytosol	36.57	12.72
Os02t0175400-01	Rice	plasma membrane	36.57	12.72
CDX87424	Canola	cytosol	36.57	12.68
CDX88489	Canola	cytosol	36.57	12.68
Os06t0662000-01	Rice	nucleus, plasma membrane	35.65	12.42
TraesCS7A01G489500.1	Wheat	plastid	33.8	11.87
TraesCS7D01G475900.2	Wheat	cytosol	33.8	11.87
TraesCS7B01G392600.1	Wheat	plastid	33.8	10.77
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	30.09	8.07
CDY17918	Canola	cytosol	9.72	6.6
CDY67023	Canola	cytosol	13.89	5.92
CDX69928	Canola	cytosol	12.04	5.79
CDY21559	Canola	cytosol	12.04	5.79
CDY44784	Canola	cytosol	12.04	5.79
Zm00001d015426_P001	Maize	cytosol	13.43	5.77
CDY21558	Canola	mitochondrion	12.04	4.7
CDY44783	Canola	mitochondrion	12.04	4.7
CDX69929	Canola	mitochondrion	12.04	4.69
CDX78350	Canola	mitochondrion	12.04	4.69
CDY40736	Canola	cytosol	12.04	4.68
CDY40737	Canola	mitochondrion	12.04	4.68
CDX81118	Canola	mitochondrion	12.04	4.68
CDX78351	Canola	mitochondrion	12.04	4.68
CDX81119	Canola	mitochondrion	12.04	4.68
CDY01384	Canola	cytosol	8.8	4.38
CDX73218	Canola	cytosol	8.8	3.93
CDX96645	Canola	cytosol	8.8	3.91
CDY31899	Canola	cytosol	8.8	3.91
CDX87646	Canola	cytosol	8.8	3.89
CDY54328	Canola	cytosol	8.33	3.7
CDY51327	Canola	cytosol	8.33	3.7
CDY29363	Canola	cytosol	8.33	3.7
CDX99946	Canola	plastid	10.19	3.66
CDX98579	Canola	plastid	10.19	3.66
CDY38701	Canola	plastid	10.19	3.66
HORVU6Hr1G069640.1	Barley	cytosol, mitochondrion	0.93	3.39
CDX99333	Canola	mitochondrion	3.24	3.08
CDY17919	Canola	cytosol	0.46	0.68
CDY21198	Canola	cytosol	0.46	0.43

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	KEGG:00300+5.1.1.7	Gene3D:1.10.1140.10	Gene3D:3.10.310.10	MapMan:4.1.2.2.3.4
GO:A0A078CMA0	InterPro:ATPase_F1/V1_b/a_C	EnsemblPlants:CDX77882	ProteinID:CDX77882	ProteinID:CDX77882.1	InterPro:DAP_epimerase_DapF
GO:GO:0003674	GO:GO:0003824	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008837
GO:GO:0009058	GO:GO:0009089	GO:GO:0009987	GO:GO:0046034	EnsemblPlantsGene:GSBRNA2T00129079001	InterPro:IPR024034
PFAM:PF01678	PANTHER:PTHR43607	PANTHER:PTHR43607:SF3	MetaCyc:PWY-2941	MetaCyc:PWY-5097	MetaCyc:PWY-7219
SUPFAM:SSF47917	SUPFAM:SSF54506	UniPathway:UPA00034	UniParc:UPI0004EE828C	InterPro:V-ATPase_asu	:

Description

BnaC03g53370D

Coordinates

chrLK031813:-:1467775..1469541

Molecular Weight (calculated)

24188.0 Da

IEP (calculated)

6.774

GRAVY (calculated)

-0.072

Length

216 amino acids

Sequence
(BLAST)

001: MVVKPLGSAL RYFTQISFFR FFDPDFINIR TKAREVLQRE DDLSEIVQLV GKDALAEGDK ITLETAKLLR EDYLAQNAFT PSDTHQSFFT EASSRKPQDD
101: VNVIIGKGAE VKFAAISELI LARKDGTISG KSGQQRTSSF CFLRAILKLE GVCSAFEILH FVKYHGFGNY FILVDNRDSS EPKITQEQAV KLCDRNFGVG
201: AESSLRCLTL MALITL

Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)

001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR

Arabidopsis Description

VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.