CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005634.1-P	Field mustard	cytosol	33.92	50.66
CDY54328	Canola	cytosol	39.21	18.31
CDY51327	Canola	cytosol	39.21	18.31
CDY31899	Canola	cytosol	39.21	18.31
CDX96645	Canola	cytosol	39.21	18.31
CDY29363	Canola	cytosol	38.77	18.11
CDX73218	Canola	cytosol	38.33	18.01
CDX87646	Canola	cytosol	38.33	17.83
CDY01384	Canola	cytosol	31.28	16.36
CDY17919	Canola	cytosol	8.37	12.93
CDY21198	Canola	cytosol	10.13	9.96
CDY67023	Canola	cytosol	15.42	6.9
CDY44783	Canola	mitochondrion	16.3	6.69
CDY40737	Canola	mitochondrion	16.3	6.67
CDY40736	Canola	cytosol	16.3	6.67
CDX81119	Canola	mitochondrion	16.3	6.65
CDX78351	Canola	mitochondrion	16.3	6.65
CDY21558	Canola	mitochondrion	15.86	6.51
CDX78350	Canola	mitochondrion	15.86	6.5
CDX81118	Canola	mitochondrion	15.86	6.49
CDX69929	Canola	mitochondrion	15.42	6.32
CDX69928	Canola	cytosol	11.45	5.79
CDY44784	Canola	cytosol	11.45	5.79
CDY21559	Canola	cytosol	11.45	5.79
CDX79274	Canola	cytosol	15.86	5.78
CDX87424	Canola	cytosol	15.86	5.78
CDY57944	Canola	cytosol	15.86	5.78
CDX88489	Canola	cytosol	15.86	5.78
CDY38701	Canola	plastid	12.33	4.66
CDX99946	Canola	plastid	12.33	4.66
CDX98579	Canola	plastid	12.33	4.66
CDX77882	Canola	mitochondrion	3.08	3.24
CDY17918	Canola	cytosol	2.2	1.57

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:3.40.50.12240	MapMan:35.1	GO:A0A078EJ14	InterPro:ATPase_F1/V1/A1_a/bsu_N
EnsemblPlants:CDX99333	ProteinID:CDX99333	ProteinID:CDX99333.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005524	GO:GO:0006139	GO:GO:0006259	GO:GO:0006270
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0046034
GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00107628001	InterPro:IPR001208	InterPro:MCM_dom	PFAM:PF00493	PFAM:PF02874
PFscan:PS50051	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	MetaCyc:PWY-7219	UniParc:UPI0004EE0CC9	InterPro:V-ATPase_su_B/beta

Description

BnaC05g34480D

Coordinates

chrLK031909:-:1209861..1212469

Molecular Weight (calculated)

25112.9 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.351

Length

227 amino acids

Sequence
(BLAST)

001: MNFHFFSSAR KLSLPQPLGY HLRNASPLHS IKWHSSAISV NLQGNQRQHI RWSDVGALDR AKYSALCQFD GGPKYQENVN IRLGDGSMRR GQVMEVDGEK
101: AVVQVFERTS EIGTVQYTEV LKTHVSQEMF GRIFNGSRKP IDYGPPILPE ACLYISGECV VPTSVYTSRK SSSGAGLTAT VGKEPEAGEF CIAGASMLDN
201: GIFCVHEFDK MDIKNQAAIR EAIEQPQ

Best Arabidopsis Sequence Match ( AT1G76030.1 )
(BLAST)

001: MGTNDLDIEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TVDLLEDHGE
201: DNFAIVFAAM GVNMETAQFF KRDFEENGSM ERVTLFLNLA NDPTIERIIT PRIALTTAEY LAYECGKHVL VILTDMSSYA DALREVSAAR EEVPGRRGYP
301: GYMYTDLATI YERAGRIEGR KGSITQIPIL TMPNDDITHP TPDLTGYITE GQIYIDRQLH NRQIYPPINV LPSLSRLMKS AIGEGMTRKD HSDVSNQLYA
401: NYAIGKDVQA MKAVVGEEAL SSEDLLYLEF LDKFERKFVM QGAYDTRNIF QSLDLAWTLL RIFPRELLHR IPAKTLDQFY SRDSTS

Arabidopsis Description

VHA-B1V-type proton ATPase subunit B1 [Source:UniProtKB/Swiss-Prot;Acc:P11574]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.