CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

cytosol: 16847873

msms PMID: 16847873 doi

V Katavic, GK Agrawal, M Hajduch, SL Harris, JJ Thelen

University of Missouri-Columbia, Department of Biochemistry, Columbia 65211, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69928	Canola	cytosol	80.9	100.0
CDY21559	Canola	cytosol	80.9	100.0
CDY44784	Canola	cytosol	80.9	100.0
CDY40737	Canola	mitochondrion	99.82	99.82
CDY44783	Canola	mitochondrion	99.28	99.64
Bra028648.1-P	Field mustard	mitochondrion	99.46	99.46
CDX78350	Canola	mitochondrion	98.02	98.19
CDX81118	Canola	mitochondrion	97.84	97.84
CDY21558	Canola	mitochondrion	97.48	97.83
CDX69929	Canola	mitochondrion	96.94	97.11
AT5G08670.1	Thale cress	mitochondrion	96.4	96.22
CDX78351	Canola	mitochondrion	96.4	96.22
AT5G08690.1	Thale cress	mitochondrion	96.22	96.04
CDX81119	Canola	mitochondrion	96.04	95.86
AT5G08680.1	Thale cress	mitochondrion	95.68	94.99
GSMUA_Achr1P12870_001	Banana	cytosol	70.45	93.32
TraesCS1B01G400300.1	Wheat	cytosol	67.93	84.34
VIT_17s0000g02900.t01	Wine grape	mitochondrion	84.14	84.3
GSMUA_Achr1P20900_001	Banana	mitochondrion, peroxisome, plastid	8.65	84.21
VIT_01s0011g04490.t01	Wine grape	mitochondrion	84.5	84.2
GSMUA_Achr9P21710_001	Banana	mitochondrion	83.6	83.6
KXG22502	Sorghum	mitochondrion	83.24	83.54
KRG90945	Soybean	mitochondrion	83.78	83.18
Zm00001d038929_P001	Maize	mitochondrion	82.7	83.0
KXG33146	Sorghum	mitochondrion	82.7	82.85
KRH35827	Soybean	nucleus	83.42	82.83
Os05t0553000-02	Rice	mitochondrion	82.16	82.61
PGSC0003DMT400078507	Potato	cytosol	82.7	82.55
Zm00001d009488_P001	Maize	plasma membrane	82.16	82.46
Solyc05g008460.2.1	Tomato	plastid	82.7	82.41
PGSC0003DMT400078610	Potato	mitochondrion	81.8	82.4
TraesCS3A01G264700.1	Wheat	mitochondrion	81.8	82.4
Solyc02g091130.2.1	Tomato	unclear	81.62	82.21
TraesCS3B01G298000.1	Wheat	mitochondrion	81.62	82.21
GSMUA_Achr3P20950_001	Banana	mitochondrion	82.16	82.01
GSMUA_Achr3P29100_001	Banana	mitochondrion	83.78	82.01
TraesCS3D01G264800.2	Wheat	golgi	81.44	81.88
Solyc04g007550.2.1	Tomato	plastid	82.88	81.85
PGSC0003DMT400015365	Potato	mitochondrion	82.7	81.67
HORVU1Hr1G083840.2	Barley	mitochondrion	81.44	81.59
HORVU3Hr1G063590.2	Barley	plasma membrane	80.9	81.49
GSMUA_Achr2P07900_001	Banana	mitochondrion	26.13	81.46
TraesCS1A01G379000.1	Wheat	mitochondrion	80.54	80.83
Zm00001d043834_P001	Maize	mitochondrion	82.34	80.32
GSMUA_Achr2P07890_001	Banana	cytosol	10.27	78.08
KRH48739	Soybean	cytosol, mitochondrion	35.14	73.58
GSMUA_AchrUn_...	Banana	mitochondrion	72.61	73.14
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	16.94	72.31
KRH18721	Soybean	cytosol	25.41	63.8
GSMUA_Achr1P20890_001	Banana	plastid	54.41	62.92
CDY17918	Canola	cytosol	30.99	54.09
CDX98579	Canola	plastid	58.2	53.74
CDX99946	Canola	plastid	58.2	53.74
CDY38701	Canola	plastid	58.2	53.74
CDY21198	Canola	cytosol	20.36	48.92
CDY17919	Canola	cytosol	9.55	36.05
CDY01384	Canola	cytosol	16.94	21.66
CDX73218	Canola	cytosol	18.56	21.33
CDY51327	Canola	cytosol	18.56	21.19
CDY54328	Canola	cytosol	18.56	21.19
CDX87646	Canola	cytosol	18.56	21.11
CDY29363	Canola	cytosol	18.38	20.99
CDY31899	Canola	cytosol	18.38	20.99
CDX96645	Canola	cytosol	18.38	20.99
CDY67023	Canola	cytosol	18.74	20.51
CDY57944	Canola	cytosol	21.98	19.58
CDX88489	Canola	cytosol	21.98	19.58
CDX87424	Canola	cytosol	21.98	19.58
CDX79274	Canola	cytosol	21.98	19.58
CDX99333	Canola	mitochondrion	6.67	16.3
CDX77882	Canola	mitochondrion	4.68	12.04

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	MapMan:2.4.6.2.2	Gene3D:2.40.10.170	Gene3D:3.40.50.300
GO:A0A078HSM2	UniProt:A0A078HSM2	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	EnsemblPlants:CDY40736	ProteinID:CDY40736
ProteinID:CDY40736.1	GO:GO:0000166	GO:GO:0000275	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787
GO:GO:0016887	GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:0099132	GO:GO:1902600
EnsemblPlantsGene:GSBRNA2T00071631001	InterPro:IPR024034	HAMAP:MF_01347	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874
PFAM:PF11421	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44	MetaCyc:PWY-7219
SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039	UniParc:UPI0004EE3E46
SEG:seg	:	:	:	:	:

Description

BnaAnng05990DATP synthase subunit beta [Source:UniProtKB/TrEMBL;Acc:A0A078HSM2]

Coordinates

chrLK032478:-:64430..66971

Molecular Weight (calculated)

59633.5 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.165

Length

555 amino acids

Sequence
(BLAST)

001: MASRRVLSSL LRSSSGRSAA KFGSRNPRLP SPSPARRAAP FGDILGRVAE YSTSSPANSA AAAPAKDEGK KKSYDYGGKG AIGKVCQVIG AIVDVRFEDQ
101: EGLPPIMTSL EVQDHPTRLV LEVSHHLGQN VVRTIAMDGT EGLVRGRRVL NTGAPITVPV GRATLGRIMN VLGEPIDERG EIKTEHYLPI HRDAPALVDL
201: ATGQEILATG IKVVDLLAPY QRGGKIGLFG GAGVGKTVLI MELINNVAKA HGGFSVFAGV GERTREGNDL YREMIESGVI KLGEKQSESK CALVYGQMNE
301: PPGARARVGL TGLTVAEYFR DAEGQDVLLF IDNIFRFTQA NSEVSALLGR IPSAVGYQPT LASDLGALQE RITTTKKGSI TSVQAIYVPA DDLTDPAPAT
401: TFAHLDATTV LSRQISELGI YPAVDPLDST SRMLSPHILG EEHYNTARGV QKVLQNYKNL QDIIAILGMD ELSEDDKLTV ARARKIQRFL SQPFHVAEIF
501: TGAPGKYVDL KENINSFQGL LDGKYDDLPE QSFYMVGGID EVVAKAEKIS KEAAA

Best Arabidopsis Sequence Match ( AT5G08670.1 )
(BLAST)

001: MASRRVLSSL LRSSSGRSAA KLGNRNPRLP SPSPARPAAP CSYLLGRVAE YATSSPASSA APSSAPAKDE GKKTYDYGGK GAIGRVCQVI GAIVDVRFED
101: QEGLPPIMTS LEVQDHPTRL VLEVSHHLGQ NVVRTIAMDG TEGLVRGRKV LNTGAPITVP VGRATLGRIM NVLGEPIDER GEIKTEHYLP IHRDAPALVD
201: LATGQEILAT GIKVVDLLAP YQRGGKIGLF GGAGVGKTVL IMELINNVAK AHGGFSVFAG VGERTREGND LYREMIESGV IKLGEKQSES KCALVYGQMN
301: EPPGARARVG LTGLTVAEYF RDAEGQDVLL FIDNIFRFTQ ANSEVSALLG RIPSAVGYQP TLASDLGALQ ERITTTKKGS ITSVQAIYVP ADDLTDPAPA
401: TTFAHLDATT VLSRQISELG IYPAVDPLDS TSRMLSPHIL GEEHYNTARG VQKVLQNYKN LQDIIAILGM DELSEDDKLT VARARKIQRF LSQPFHVAEI
501: FTGAPGKYVD LKENINSFQG LLDGKYDDLS EQSFYMVGGI DEVVAKAEKI AKESAA

Arabidopsis Description

ATP synthase alpha/beta family protein [Source:TAIR;Acc:AT5G08670]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.