Factsheet for PGSC0003DMT400078610

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 10
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091130.2.1	Tomato	unclear	99.09	99.09
CDX69928	Canola	cytosol	73.68	90.42
CDY44784	Canola	cytosol	73.68	90.42
CDY21559	Canola	cytosol	73.68	90.42
VIT_01s0011g04490.t01	Wine grape	mitochondrion	91.11	90.13
KXG22502	Sorghum	mitochondrion	89.84	89.51
Zm00001d009488_P001	Maize	plasma membrane	89.84	89.51
Zm00001d038929_P001	Maize	mitochondrion	89.66	89.33
Os05t0553000-02	Rice	mitochondrion	89.47	89.31
KXG33146	Sorghum	mitochondrion	89.47	88.99
TraesCS3B01G298000.1	Wheat	mitochondrion	88.2	88.2
TraesCS1B01G400300.1	Wheat	cytosol	71.32	87.92
PGSC0003DMT400078507	Potato	cytosol	88.57	87.77
HORVU3Hr1G063590.2	Barley	plasma membrane	87.66	87.66
TraesCS3D01G264800.2	Wheat	golgi	87.66	87.5
HORVU1Hr1G083840.2	Barley	mitochondrion	87.48	87.0
PGSC0003DMT400015365	Potato	mitochondrion	88.2	86.48
Zm00001d043834_P001	Maize	mitochondrion	89.11	86.29
AT5G08670.1	Thale cress	mitochondrion	83.3	82.55
AT5G08690.1	Thale cress	mitochondrion	83.3	82.55
CDY44783	Canola	mitochondrion	82.76	82.46
CDX78350	Canola	mitochondrion	82.76	82.31
CDX69929	Canola	mitochondrion	82.76	82.31
AT5G08680.1	Thale cress	mitochondrion	83.48	82.29
CDY21558	Canola	mitochondrion	82.58	82.28
CDX81119	Canola	mitochondrion	82.94	82.19
CDX78351	Canola	mitochondrion	82.94	82.19
CDX81118	Canola	mitochondrion	82.58	81.98
Bra009363.1-P	Field mustard	mitochondrion	82.58	81.98
Bra006013.1-P	Field mustard	mitochondrion	82.4	81.95
Bra009360.1-P	Field mustard	mitochondrion	82.21	81.92
CDY40737	Canola	mitochondrion	82.4	81.8
CDY40736	Canola	cytosol	82.4	81.8
Bra028648.1-P	Field mustard	mitochondrion	82.4	81.8
Bra028649.1-P	Field mustard	mitochondrion	80.4	78.55
KRH48739	Soybean	cytosol, mitochondrion	35.93	74.72
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	17.06	72.31
KRH18721	Soybean	cytosol	26.68	66.52
Bra006014.1-P	Field mustard	mitochondrion	82.76	61.79
PGSC0003DMT400002642	Potato	cytosol	41.92	56.62
PGSC0003DMT400074197	Potato	cytosol	23.23	20.55
PGSC0003DMT400068704	Potato	cytosol	17.79	20.46
PGSC0003DMT400068136	Potato	cytosol	23.05	20.39
PGSC0003DMT400008800	Potato	cytosol	18.87	19.85

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	EntrezGene:102603549	MapMan:2.4.6.2.2	Gene3D:2.40.10.170
Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0006811	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0009987
GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0045261	GO:GO:0046034
GO:GO:0046933	GO:GO:0099132	GO:GO:1902600	InterPro:IPR024034	UniProt:M1D0F0	HAMAP:MF_01347
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	EnsemblPlantsGene:PGSC0003DMG400030594	PGSC:PGSC0003DMG400030594	EnsemblPlants:PGSC0003DMT400078610
PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44	SMART:SM00382	SUPFAM:SSF47917
SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039	UniParc:UPI000295DF0C	RefSeq:XP_006357802.1	SEG:seg

Description

ATP synthase subunit beta [Source:PGSC_GENE;Acc:PGSC0003DMG400030594]

Coordinates

chr2:+:41667802..41670991

Molecular Weight (calculated)

59493.4 Da

IEP (calculated)

6.462

GRAVY (calculated)

-0.127

Length

551 amino acids

Sequence
(BLAST)

001: MASRRFFSSM LRSSIRHSST KSSLTSSIYR SSPAGHLLHR AVKYATAAAA KEAPAPQKKP TTIKETGGKI TDEYTGAGAL GSVCQVIGAV VDVRFDEGLP
101: PILTALEVLD HDIRVVLEVA QHMGENMVRT IAMDGTEGLV RGQRVLNTGS PIRVPVGRAT LGRIINVIGE PIDERGDLKT EHYLPIHREA PSFVEQATEQ
201: QILVTGIKVV DLLAPYQRGG KIGLFGGAGV GKTVLIMELI NNVAKAHGGF SVFAGVGERT REGNDLYREM IESGVIKLGE KQGESKCALV YGQMNEPPGA
301: RARVGLTGLT VAEHFRDAEG QDVLLFIDNI FRFTQANSEV SALLGRIPSA VGYQPTLATD LGGLQERITT TKKGSITSVQ AIYVPADDLT DPAPATTFAH
401: LDATTVLSRQ ISELGIYPAV DPLDSTSRML SPHILGEDHY NTARGVQKVL QNYKNLQDII AILGMDELSE DDKLTVARAR KIQRFLSQPF HVAEVFTGAP
501: GKYVELKESI QSFQGVLDGK YDDLSEQSFY LVGGIEEVIA KAEKIAKESA S

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.