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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 3
  • plastid 2
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:mitochondrion
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_AchrUn_... Banana cytosol 4.17 89.47
CDY17918 Canola cytosol 67.16 86.16
Solyc12g042230.1.1 Tomato cytosol 17.65 77.42
PGSC0003DMT400078610 Potato mitochondrion 56.62 41.92
PGSC0003DMT400078507 Potato cytosol 56.13 41.19
PGSC0003DMT400015365 Potato mitochondrion 56.13 40.75
GSMUA_Achr1P01800_001 Banana mitochondrion 8.09 38.37
PGSC0003DMT400068704 Potato cytosol 16.42 13.99
PGSC0003DMT400008800 Potato cytosol 16.42 12.79
PGSC0003DMT400068136 Potato cytosol 19.36 12.68
PGSC0003DMT400074197 Potato cytosol 19.12 12.52
CDY17919 Canola cytosol 0.49 1.36
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:1.1.9.2.5Gene3D:1.10.1140.10Gene3D:3.40.50.300ProteinID:AAQ90155
ProteinID:AAQ90155.1InterPro:ATP_synth_F1_bsuInterPro:ATP_synth_F1_dsu/esuInterPro:ATP_synth_F1_dsu/esu_NInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_F1/V1_b/a_C
InterPro:ATPase_a/bsu_ASInterPro:ATPsynth_dsu/esu_NEMBL:AY300043ncoils:CoilGO:GO:0000166GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0015986GO:GO:0016020GO:GO:0016787GO:GO:0045261
GO:GO:0046933GO:GO:0099132InterPro:IPR024034InterPro:IPR036771UniProt:M0ZKF0HAMAP:MF_00530
InterPro:P-loop_NTPasePFAM:PD000944PFAM:PF00006PFAM:PF02823EnsemblPlantsGene:PGSC0003DMG400001014PGSC:PGSC0003DMG400001014
EnsemblPlants:PGSC0003DMT400002642ScanProsite:PS00152PANTHER:PTHR15184PANTHER:PTHR15184:SF43SUPFAM:SSF47917SUPFAM:SSF51344
SUPFAM:SSF52540TIGRFAMs:TIGR01039TIGRFAMs:TIGR01216UniParc:UPI0002963DC5::
Description
H+-transporting two-sector ATPase, alpha/beta subunit, central region [Source:PGSC_GENE;Acc:PGSC0003DMG400001014]
Coordinates
chr1:-:13805351..13806690
Molecular Weight (calculated)
44628.5 Da
IEP (calculated)
4.502
GRAVY (calculated)
-0.100
Length
408 amino acids
Sequence
(BLAST)
001: MELINNIAKA HGGVSVFGGV GERTREGNDL YMEMKESGVI NKENIAESKV ALVYGQMNEP PGARMRVGLT ALTMAEYFRD VNEQDVLLFI DNIFRFVQAG
101: SEVSALLGRM PSAVGYQPTL STEMGSLQER ITSTKDGSIT SIQAVYVPAD DLTDPAPATT FAHLDATTVL SRGLAAKGIY PAVDPLDSTS TMLQPRIVGE
201: EHYETAQRVK QTLQRYKELQ DIIAILGLDE LSEEDRLLVA RARKIERFLS QPFFVAEVFT GSPGKYVGLA ETIRGFQLIL SGELDGLPEQ AFYLVEVEEI
301: VLSTNSGQIG ILPNHAPIAT AVDIGILRIR LNDQWLTMAL MGGFARIGNN EITVLVNDAE KGSDINPQEA QQTLEIAEAN VKKAEGRRQK IEANLALLKF
401: LQSLPTDN
Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)
001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
Arabidopsis Description
ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.