Factsheet for PGSC0003DMT400008800

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111760.2.1	Tomato	plastid	91.22	99.79
PGSC0003DMT400068704	Potato	cytosol	89.89	98.33
KRG90658	Soybean	cytosol	89.89	96.52
KRH36093	Soybean	endoplasmic reticulum	89.69	96.31
KRH00994	Soybean	cytosol	89.69	96.11
TraesCS3D01G250900.1	Wheat	cytosol	89.5	96.11
VIT_03s0038g02760.t01	Wine grape	cytosol	89.5	96.11
Zm00001d036961_P004	Maize	plasma membrane, plastid	89.31	96.1
KXG20226	Sorghum	cytosol	89.31	96.1
CDY01384	Canola	cytosol	79.58	96.08
KRH40221	Soybean	nucleus	89.5	95.91
TraesCS3A01G250500.1	Wheat	extracellular	89.31	95.9
TraesCS6A01G186300.1	Wheat	cytosol	89.31	95.9
GSMUA_Achr2P16710_001	Banana	cytosol	89.31	95.9
GSMUA_Achr7P09090_001	Banana	cytosol, plasma membrane	89.31	95.9
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	89.31	95.9
TraesCS6B01G218100.1	Wheat	cytosol	89.31	95.9
Os01t0711000-01	Rice	plastid	89.12	95.7
AT4G38510.5	Thale cress	cytosol	90.08	95.55
TraesCS7A01G362000.1	Wheat	cytosol	88.74	95.29
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	88.74	95.29
OQU84653	Sorghum	cytosol	88.74	95.29
TraesCS7D01G361000.1	Wheat	cytosol	88.74	95.29
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	88.74	95.29
CDX73218	Canola	cytosol	87.6	95.03
Bra025804.1-P	Field mustard	cytosol	72.9	94.55
CDX87646	Canola	cytosol	87.98	94.47
Bra015797.1-P	Field mustard	cytosol	87.98	94.47
CDY54328	Canola	cytosol	87.21	94.03
CDY51327	Canola	cytosol	87.02	93.83
Zm00001d046336_P001	Maize	cytosol	89.12	93.78
CDY31899	Canola	cytosol	86.83	93.62
CDX96645	Canola	cytosol	86.83	93.62
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	89.5	93.24
CDY29363	Canola	cytosol	86.45	93.21
Bra012223.1-P	Field mustard	endoplasmic reticulum	83.4	92.78
HORVU3Hr1G067000.1	Barley	cytosol	44.85	91.09
HORVU3Hr1G067040.5	Barley	cytosol, plastid	89.5	88.49
HORVU7Hr1G087190.1	Barley	plastid	88.93	88.42
HORVU6Hr1G039890.3	Barley	mitochondrion	89.31	86.03
TraesCS3B01G280000.2	Wheat	cytosol	87.79	84.25
PGSC0003DMT400074197	Potato	cytosol	23.66	19.9
PGSC0003DMT400068136	Potato	cytosol	23.09	19.42
PGSC0003DMT400078610	Potato	mitochondrion	19.85	18.87
PGSC0003DMT400078507	Potato	cytosol	19.08	17.99
PGSC0003DMT400015365	Potato	mitochondrion	18.89	17.62
PGSC0003DMT400002642	Potato	cytosol	12.79	16.42

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:102593980	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034
GO:GO:1902600	UniProt:M0ZV38	HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874
EnsemblPlantsGene:PGSC0003DMG400003419	PGSC:PGSC0003DMG400003419	EnsemblPlants:PGSC0003DMT400008800	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389
PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI0002954B6E	InterPro:V-ATPase_su_B/beta	:

Description

Vacuolar ATPase subunit B [Source:PGSC_GENE;Acc:PGSC0003DMG400003419]

Coordinates

chr1:-:88198466..88203427

Molecular Weight (calculated)

58449.9 Da

IEP (calculated)

5.300

GRAVY (calculated)

-0.277

Length

524 amino acids

Sequence
(BLAST)

001: MGSAPNNLEM EEGTLEVGMG KFSDFYKPSV CSTRKYRTVS GVAGPLVILD KVKGPKYQEI VNIRLGDGTT RRGQVLEVDG EKAVVQVFEG TSGIDNKYTT
101: VQFTGEVLKT PVSLDMLGRI FNGSGKPIDN GPPILPEAYR DISGRSSINP SERTYPEEMI QTGISTVDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA
201: GLVKRLEKSD NLLEGGEEDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA
301: LREVSAAREE VPGRRGYPGY MYTDLATIYE RAGRIEGRTG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI
401: GEGMTRRDHS DVSNQARKFF SKDVFHNCSF IIICSLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVSQG AYDTRNIFQS LDLAWTLLRI
501: FPRELLHRIP AKTLDQYYSR DASN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.