Factsheet for GSMUA_Achr7P09090_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 21334471

msms PMID: 21334471 doi

A Vertommen, AL Møller, JH Cordewener, R Swennen, B Panis, C Finnie, AH America, SC Carpentier

Laboratory of Tropical Crop Improvement, Department of Biosystems, K.U. Leuven, Kasteelpark Arenberg 13, PO box 2455, B-3001 Heverlee, Belgium.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16710_001	Banana	cytosol	99.18	99.18
GSMUA_Achr5P22160_001	Banana	cytosol	97.95	97.95
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	95.49	97.29
PGSC0003DMT400068704	Potato	cytosol	95.49	97.29
Solyc01g111760.2.1	Tomato	plastid	95.29	97.08
VIT_03s0038g02760.t01	Wine grape	cytosol	96.31	96.31
AT4G38510.5	Thale cress	cytosol	97.13	95.95
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	97.13	94.23
PGSC0003DMT400008800	Potato	cytosol	95.9	89.31
GSMUA_Achr8P05550_001	Banana	cytosol	96.93	85.69
GSMUA_Achr1P12870_001	Banana	cytosol	18.85	21.96
GSMUA_Achr1P01800_001	Banana	mitochondrion	3.48	19.77
GSMUA_Achr9P23040_001	Banana	cytosol	25.0	19.65
GSMUA_Achr1P10520_001	Banana	plasma membrane	25.0	19.65
GSMUA_Achr11P...	Banana	cytosol	24.8	19.48
GSMUA_Achr9P21710_001	Banana	mitochondrion	20.29	17.84
GSMUA_Achr3P29100_001	Banana	mitochondrion	20.49	17.64
GSMUA_Achr3P20950_001	Banana	mitochondrion	19.88	17.45
GSMUA_AchrUn_...	Banana	mitochondrion	18.85	16.7
GSMUA_Achr2P07890_001	Banana	cytosol	2.25	15.07
GSMUA_Achr1P20900_001	Banana	mitochondrion, peroxisome, plastid	1.64	14.04
GSMUA_Achr1P20890_001	Banana	plastid	13.73	13.96
GSMUA_Achr2P07900_001	Banana	mitochondrion	4.71	12.92
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600
EnsemblPlantsGene:GSMUA_Achr7G09090_001	EnsemblPlants:GSMUA_Achr7P09090_001	EnsemblPlants:GSMUA_Achr7T09090_001	UniProt:M0TFZ7	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI000294BF7F	InterPro:V-ATPase_su_B/beta	:	:

Description

V-type proton ATPase subunit B2 [Source:GMGC_GENE;Acc:GSMUA_Achr7G09090_001]

Coordinates

chr7:-:7432261..7441320

Molecular Weight (calculated)

54493.3 Da

IEP (calculated)

4.843

GRAVY (calculated)

-0.285

Length

488 amino acids

Sequence
(BLAST)

001: MGEAKKNVDM EEGSLEIGME YRTVSGVAGP LVILEKVKGP KYQEIVNIRL GDGTIRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKSDNLLEKD
201: EEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHADVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ YYSRDTTH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.