Factsheet for VIT_18s0001g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 5
vacuole 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068704	Potato	cytosol	93.24	97.91
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	93.24	97.91
VIT_03s0038g02760.t01	Wine grape	cytosol	94.83	97.75
GSMUA_Achr2P16710_001	Banana	cytosol	94.63	97.54
Solyc01g111760.2.1	Tomato	plastid	92.64	97.29
GSMUA_Achr7P09090_001	Banana	cytosol, plasma membrane	94.23	97.13
CDY01384	Canola	cytosol	83.5	96.77
KRG90658	Soybean	cytosol	93.44	96.31
KRH36093	Soybean	endoplasmic reticulum	93.24	96.11
KRH40221	Soybean	nucleus	93.24	95.91
KRH00994	Soybean	cytosol	93.24	95.91
TraesCS3D01G250900.1	Wheat	cytosol	92.84	95.7
TraesCS3A01G250500.1	Wheat	extracellular	92.64	95.49
OQU84653	Sorghum	cytosol	92.64	95.49
AT4G38510.5	Thale cress	cytosol	93.64	95.34
Bra025804.1-P	Field mustard	cytosol	76.54	95.3
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	92.45	95.29
TraesCS6A01G186300.1	Wheat	cytosol	92.45	95.29
TraesCS6B01G218100.1	Wheat	cytosol	92.45	95.29
CDX73218	Canola	cytosol	91.45	95.24
Os01t0711000-01	Rice	plastid	92.25	95.08
Zm00001d036961_P004	Maize	plasma membrane, plastid	92.05	95.07
KXG20226	Sorghum	cytosol	92.05	95.07
CDY54328	Canola	cytosol	91.85	95.06
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	92.05	94.88
TraesCS7D01G361000.1	Wheat	cytosol	92.05	94.88
TraesCS7A01G362000.1	Wheat	cytosol	92.05	94.88
CDX87646	Canola	cytosol	92.05	94.88
Bra015797.1-P	Field mustard	cytosol	92.05	94.88
CDY51327	Canola	cytosol	91.65	94.86
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	91.85	94.67
CDY31899	Canola	cytosol	91.45	94.65
CDX96645	Canola	cytosol	91.45	94.65
CDY29363	Canola	cytosol	91.05	94.24
Bra012223.1-P	Field mustard	endoplasmic reticulum	87.48	93.42
Zm00001d046336_P001	Maize	cytosol	91.85	92.77
HORVU3Hr1G067000.1	Barley	cytosol	46.32	90.31
PGSC0003DMT400008800	Potato	cytosol	93.24	89.5
VIT_06s0009g03730.t01	Wine grape	cytosol	15.9	88.89
HORVU3Hr1G067040.5	Barley	cytosol, plastid	93.04	88.3
HORVU7Hr1G087190.1	Barley	plastid	92.25	88.05
HORVU6Hr1G039890.3	Barley	mitochondrion	92.45	85.48
TraesCS3B01G280000.2	Wheat	cytosol	91.25	84.07
VIT_09s0054g00890.t01	Wine grape	extracellular	24.85	20.06
VIT_14s0068g01700.t01	Wine grape	cytosol	4.97	19.68
VIT_04s0008g02580.t01	Wine grape	cytosol	24.25	19.33
VIT_01s0011g04490.t01	Wine grape	mitochondrion	19.68	17.77
VIT_17s0000g02900.t01	Wine grape	mitochondrion	19.48	17.69
VIT_00s0332g00060.t01	Wine grape	mitochondrion	7.36	16.23

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:100257413	wikigene:100257413	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	ProteinID:CBI18923	ProteinID:CBI18923.3
UniProt:E0CQW9	EMBL:FN595227	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0015992	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600
EntrezGene:LOC100257413	wikigene:LOC100257413	HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874
PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGR:TC66530
TIGR:TC67523	TIGRFAMs:TIGR01040	UniParc:UPI0001BE1208	InterPro:V-ATPase_su_B/beta	ArrayExpress:VIT_18s0001g01020	EnsemblPlantsGene:VIT_18s0001g01020
EnsemblPlants:VIT_18s0001g01020.t01	unigene:Vvi.24667	RefSeq:XP_002285897	RefSeq:XP_002285897.1	RefSeq:XP_010664138.1	:

Description

No Description!

Coordinates

chr18:-:1698708..1705800

Molecular Weight (calculated)

56185.2 Da

IEP (calculated)

4.719

GRAVY (calculated)

-0.285

Length

503 amino acids

Sequence
(BLAST)

001: MCYREFERSE EKSLNMGEAQ NMPDMEEGSL LVGMEYRTVS GVAGPLVILE KVKGPKYQEI VNIRLGDGTT RRGQVLEVDG EKAVVQVFEG TSGIDNKYTT
101: VQFTGEVLKT PVSLDMLGRI FNGSGKPIDN GPPILPEAYL DISGSSINPS ERTYPEEMIQ TGISTIDVMN SIARGQKIPL FSAAGLPHNE IAAQICRQAG
201: LVKRLEKSGN LLEDEVEDNF AIVFAAMGVN METAQFFKRD FEENGSMERV TLFLNLANDP TIERIITPRI ALTTAEYLAY ECGKHVLVIL TDMSSYADAL
301: REVSAAREEV PGRRGYPGYM YTDLATIYER AGRIEGRKGS ITQIPILTMP NDDITHPTPD LTGYITEGQI YIDRQLHNRQ IYPPINVLPS LSRLMKSAIG
401: EGMTRRDHAD VSNQLYANYA IGKDVQAMKA VVGEEALSSE DLLYLEFLDK FERKFVAQGA YDTRNIFQSL DLAWTLLRIF PRELLHRIPA KTLDQYYSRD
501: AAN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.