Factsheet for Bra012223.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 3
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY01384	Canola	cytosol	92.14	100.0
AT1G20260.1	Thale cress	cytosol	95.97	92.81
Bra025804.1-P	Field mustard	cytosol	78.98	92.08
Bra015797.1-P	Field mustard	cytosol	95.12	91.8
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	92.99	91.44
PGSC0003DMT400068704	Potato	cytosol	92.99	91.44
Solyc01g111760.2.1	Tomato	plastid	92.78	91.23
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	93.21	89.96
TraesCS6B01G218100.1	Wheat	cytosol	93.21	89.96
TraesCS6A01G186300.1	Wheat	cytosol	93.21	89.96
VIT_03s0038g02760.t01	Wine grape	cytosol	92.99	89.75
TraesCS7D01G361000.1	Wheat	cytosol	92.57	89.34
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	92.57	89.34
TraesCS7A01G362000.1	Wheat	cytosol	92.57	89.34
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	92.57	89.34
Zm00001d036961_P004	Maize	plasma membrane, plastid	92.36	89.32
KXG20226	Sorghum	cytosol	92.36	89.32
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	93.42	87.48
Zm00001d046336_P001	Maize	cytosol	92.36	87.35
PGSC0003DMT400008800	Potato	cytosol	92.78	83.4
HORVU7Hr1G087190.1	Barley	plastid	92.57	82.73
HORVU6Hr1G039890.3	Barley	mitochondrion	93.21	80.7
Bra005634.1-P	Field mustard	cytosol	14.65	45.39
Bra008385.1-P	Field mustard	cytosol	23.78	19.05
Bra035074.1-P	Field mustard	cytosol	24.63	18.62
Bra003633.1-P	Field mustard	cytosol	24.63	18.62
Bra006013.1-P	Field mustard	mitochondrion	20.38	17.33
Bra028648.1-P	Field mustard	mitochondrion	20.38	17.3
Bra009363.1-P	Field mustard	mitochondrion	20.38	17.3
Bra009360.1-P	Field mustard	mitochondrion	19.96	17.0
Bra028649.1-P	Field mustard	mitochondrion	20.17	16.84
Bra006014.1-P	Field mustard	mitochondrion	20.38	13.01

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:Bra012223	EnsemblPlants:Bra012223.1	EnsemblPlants:Bra012223.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	UniProt:M4D6W3	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
SUPFAM:SSF52540	SignalP:SignalP-noTM	TIGRFAMs:TIGR01040	UniParc:UPI00025415F8	InterPro:V-ATPase_su_B/beta	:

Description

AT1G20260 (E=4e-257) | hydrogen ion transporting ATP synthase, rotational mechanism / hydrolase, acting on acid anhydrides, catalyzing transmembrane movement of substances / proton-transporting ATPase, rotational mechanism

Coordinates

chrA07:-:9211810..9214837

Molecular Weight (calculated)

52738.3 Da

IEP (calculated)

4.908

GRAVY (calculated)

-0.210

Length

471 amino acids

Sequence
(BLAST)

001: MYLLLPTNFA IARVIVTLLV EGPKYQEIVN IRLGDGSMRR GQVLEVDGEK AVVQVFEGTS GIDNKFTTVQ FTGEVLKTPV SQDMLGRIFN GSGKPIDNGP
101: PILPEAYLDI SGSSINPSER TYPEEMIQTG ISTIDVMNSI ARGQKIPLFS AAGLPHNEIA AQICRQAGLV KRLEKTENLI EDHGEDNFAI VFAAMGVNME
201: TAQFFKRDFE ENGSMERVTL FLNLANDPTI ERIITPRIAL TTAEYLAYEC GKHVLVILTD MSSYADALRE VSAAREEVPG RRGYPGYMYT DLATIYERAG
301: RIEGRKGSIT QIPILTMPND DITHPTPDLT GYITEGQIYI DRQLHNRQIY PPINVLPSLS RLMKSAIGEG MTRRDHSDVS NQLYANYAIG KDVQAMKAVV
401: GEEALSSEDL LYLEFLDKFE RKFVMQGAYD TRNIFQSLDL AWTLLRIFPR ELLHRIPAKT LDQFYSRDST S

Best Arabidopsis Sequence Match ( AT1G20260.1 )
(BLAST)

001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS

Arabidopsis Description

VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.