Factsheet for TraesCS7B01G265500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid, nucleus

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, nucleus, plastid
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

plastid: 22160430
plastid: 22736107
golgi: 23128297
golgi: 25769308
unclear: 25769308
nucleus: 26228564
nucleus: 26579155

msms PMID: 22736107 doi

AH Kamal, K Cho, DE Kim, N Uozumi, KY Chung, SY Lee, JS Choi, SW Cho, CS Shin, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk 361-763, Korea.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS7A01G377600.1
TraesCS7B01G279300.1
TraesCS7D01G374400.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	TraesCS7A01G377600.1	AT5G35410.1	17875927
AT1G76030.1	TraesCS7B01G279300.1	AT5G35410.1	17875927
AT1G76030.1	TraesCS7D01G374400.2	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G361000.1	Wheat	cytosol	100.0	100.0
TraesCS7A01G362000.1	Wheat	cytosol	99.8	99.8
Zm00001d036961_P004	Maize	plasma membrane, plastid	98.36	98.56
KXG20226	Sorghum	cytosol	98.36	98.56
TraesCS6B01G218100.1	Wheat	cytosol	97.95	97.95
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	97.95	97.95
Solyc01g111760.2.1	Tomato	plastid	95.08	96.87
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.47	96.24
PGSC0003DMT400068704	Potato	cytosol	94.47	96.24
Zm00001d046336_P001	Maize	cytosol	98.16	96.18
CDY01384	Canola	cytosol	85.25	95.85
Bra025804.1-P	Field mustard	cytosol	79.3	95.79
CDX73218	Canola	cytosol	94.06	95.03
AT1G20260.1	Thale cress	cytosol	94.67	94.87
VIT_03s0038g02760.t01	Wine grape	cytosol	94.67	94.67
AT1G76030.1	Thale cress	cytosol	94.26	94.65
CDY54328	Canola	cytosol	94.26	94.65
CDX87646	Canola	cytosol	94.47	94.47
Bra015797.1-P	Field mustard	cytosol	94.47	94.47
CDY51327	Canola	cytosol	94.06	94.44
CDY31899	Canola	cytosol	93.85	94.24
CDX96645	Canola	cytosol	93.85	94.24
CDY29363	Canola	cytosol	93.44	93.83
Bra012223.1-P	Field mustard	endoplasmic reticulum	89.34	92.57
HORVU7Hr1G087190.1	Barley	plastid	99.8	92.41
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	94.88	92.05
PGSC0003DMT400008800	Potato	cytosol	95.29	88.74
TraesCS3B01G280000.2	Wheat	cytosol	94.26	84.25
TraesCS3B01G186000.1	Wheat	cytosol	18.24	21.29
TraesCS1B01G400300.1	Wheat	cytosol	18.24	19.91
TraesCS7B01G392600.1	Wheat	plastid	25.61	18.44
TraesCS3B01G298000.1	Wheat	mitochondrion	20.29	17.97

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389
PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	EnsemblPlantsGene:TraesCS7B01G265500	EnsemblPlants:TraesCS7B01G265500.1	InterPro:V-ATPase_su_B/beta
TIGR:cd01135	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:487810389..487814793

Molecular Weight (calculated)

54011.6 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.236

Length

488 amino acids

Sequence
(BLAST)

001: MGLVKEGADM EEGTLEIGIE YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKGKHAEGGG
201: EDDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRTGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDA FYSRDAAH

Best Arabidopsis Sequence Match ( AT4G38510.1 )
(BLAST)

001: MGAAENNLEM EGTLEIGMEY RTVSGVAGPL VILEKVKGPK YQEIVNIRLG DGTTRRGQVL EVDGEKAVVQ VFEGTSGIDN KYTTVQFTGE VLKTPVSLDM
101: LGRIFNGSGK PIDNGPPILP EAYLDISGSS INPSERTYPE EMIQTGISTI DVMNSIARGQ KIPLFSAAGL PHNEIAAQIC RQAGLVKRLE KSDNLLEHQE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV AQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.