Factsheet for Os06t0568200-01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plasma membrane, nucleus

Predictor Summary:

cytosol 5
plastid 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

vacuole: 15069638
vacuole: 16212432
nucleus: 19621931
nucleus: 24133045
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 24133045 doi

DK Jaiswal, D Ray, MK Choudhary, P Subba, A Kumar, J Verma, R Kumar, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, New Delhi, India.

msms PMID: 16212432 doi

H Konishi, M Maeshima, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 15069638 doi

N Tanaka, M Fujita, H Handa, S Murayama, M Uemura, Y Kawamura, T Mitsui, S Mikami, Y Tozawa, T Yoshinaga, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 305-8602, Tsukuba, Japan.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os06t0606000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G76030.1	Os06t0606000-01	AT5G35410.1	17875927

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036961_P004	Maize	plasma membrane, plastid	98.57	98.77
KXG20226	Sorghum	cytosol	98.57	98.77
TraesCS7D01G361000.1	Wheat	cytosol	97.95	97.95
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	97.95	97.95
TraesCS7A01G362000.1	Wheat	cytosol	97.75	97.75
Solyc01g111760.2.1	Tomato	plastid	95.08	96.87
Zm00001d046336_P001	Maize	cytosol	98.36	96.39
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.47	96.24
PGSC0003DMT400068704	Potato	cytosol	94.47	96.24
Bra025804.1-P	Field mustard	cytosol	79.51	96.04
CDY01384	Canola	cytosol	85.25	95.85
Os01t0711000-01	Rice	plastid	95.7	95.7
CDX73218	Canola	cytosol	94.06	95.03
VIT_03s0038g02760.t01	Wine grape	cytosol	94.88	94.88
AT1G20260.1	Thale cress	cytosol	94.67	94.87
AT1G76030.1	Thale cress	cytosol	94.47	94.86
CDY51327	Canola	cytosol	94.26	94.65
CDY54328	Canola	cytosol	94.26	94.65
Bra015797.1-P	Field mustard	cytosol	94.47	94.47
CDX87646	Canola	cytosol	94.47	94.47
CDX96645	Canola	cytosol	93.85	94.24
CDY31899	Canola	cytosol	93.85	94.24
CDY29363	Canola	cytosol	93.44	93.83
Bra012223.1-P	Field mustard	endoplasmic reticulum	89.34	92.57
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	94.67	91.85
HORVU7Hr1G087190.1	Barley	plastid	98.16	90.89
PGSC0003DMT400008800	Potato	cytosol	95.29	88.74
Os06t0120732-00	Rice	cytosol	7.99	23.21
Os12t0207500-00	Rice	extracellular, plastid	16.39	23.12
Os10t0355800-00	Rice	cytosol, extracellular, plastid	18.44	21.43
CAA34003	Rice	extracellular	20.7	20.28
Os06t0662000-01	Rice	nucleus, plasma membrane	25.2	19.84
Os02t0175400-01	Rice	plasma membrane	25.0	19.65
Os05t0553000-02	Rice	mitochondrion	20.29	17.93

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	EntrezGene:4341339	EMBL:AK064802
EMBL:AK099907	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	ProteinID:BAB61925.1
ProteinID:BAD54559.1	ProteinID:BAD54582.1	ProteinID:BAF19816.1	ProteinID:BAS98297.1	ProteinID:BAS98298.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0016020	GO:GO:0033180
GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310	EnsemblPlantsGene:Os06g0568200	EnsemblPlants:Os06t0568200-01	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
UniProt:Q93W07	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI00000A817A	InterPro:V-ATPase_su_B/beta	RefSeq:XP_015643754.1

Description

Vacuolar H-ATPase B subunit, vacuolar-ATPase subunit B, vacuolar H+-ATPase B subunit, V-ATPase B, Vacuolar ATPase B subunitVacuolar ATPase B subunit. (Os06t0568200-01);Similar to Vacuolar ATPase B subunit. (Os06t0568200-02)

Coordinates

chr6:-:21963208..21968733

Molecular Weight (calculated)

54061.6 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.255

Length

488 amino acids

Sequence
(BLAST)

001: MGLVKDGAAD LEEGTLEIGM EYRTVSGVAG PLVILDKVKG PKYQEIVNIR LGDGTTRRGQ VLEVDGEKAV VQVFEGTSGI DNKYTTVQFT GEVLKTPVSL
101: DMLGRIFNGS GKPIDNGPPI LPEAYLDISG SSINPSERTY PEEMIQTGIS TIDVMNSIAR GQKIPLFSAA GLPHNEIAAQ ICRQAGLVKS LEKGKHAEGG
201: EDDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRSGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VTQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ YYSRDATH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.