Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, plastid
Predictor Summary:
Predictor Summary:
- cytosol 4
- plastid 1
- mitochondrion 1
- cytoskeleton 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
extracellular:
20408568
plastid: 22065420 plastid: 23198870 plasma membrane: 23508561 plasma membrane: 27341663 |
msms PMID:
23198870
doi
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID:
20408568
doi
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Zm00001d000407_P001 | |
Zm00001d036879_P001 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G76030.1 | Zm00001d000407_P001 | AT5G35410.1 | 17875927 |
AT1G76030.1 | Zm00001d036879_P001 | AT5G35410.1 | 17875927 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KXG20226 | Sorghum | cytosol | 100.0 | 100.0 |
Os06t0568200-01 | Rice | nucleus, plasma membrane, vacuole | 98.77 | 98.57 |
TraesCS7D01G361000.1 | Wheat | cytosol | 98.56 | 98.36 |
TraesCS7B01G265500.1 | Wheat | golgi, nucleus, plastid | 98.56 | 98.36 |
TraesCS7A01G362000.1 | Wheat | cytosol | 98.36 | 98.16 |
Solyc01g111760.2.1 | Tomato | plastid | 95.89 | 97.49 |
Zm00001d046336_P001 | Maize | cytosol | 99.59 | 97.39 |
PGSC0003DMT400068704 | Potato | cytosol | 95.28 | 96.87 |
Solyc10g055670.1.1 | Tomato | cytosol, nucleus, unclear | 95.07 | 96.66 |
Bra025804.1-P | Field mustard | cytosol | 79.67 | 96.04 |
CDY01384 | Canola | cytosol | 85.22 | 95.62 |
VIT_03s0038g02760.t01 | Wine grape | cytosol | 95.28 | 95.08 |
CDX73218 | Canola | cytosol | 94.25 | 95.03 |
AT1G20260.1 | Thale cress | cytosol | 94.87 | 94.87 |
AT1G76030.1 | Thale cress | cytosol | 94.46 | 94.65 |
CDY54328 | Canola | cytosol | 94.46 | 94.65 |
CDX87646 | Canola | cytosol | 94.66 | 94.47 |
Bra015797.1-P | Field mustard | cytosol | 94.66 | 94.47 |
CDY51327 | Canola | cytosol | 94.25 | 94.44 |
CDY31899 | Canola | cytosol | 94.05 | 94.24 |
CDX96645 | Canola | cytosol | 94.05 | 94.24 |
CDY29363 | Canola | cytosol | 93.63 | 93.83 |
Bra012223.1-P | Field mustard | endoplasmic reticulum | 89.32 | 92.36 |
VIT_18s0001g01020.t01 | Wine grape | cytosol, extracellular | 95.07 | 92.05 |
HORVU7Hr1G087190.1 | Barley | plastid | 98.77 | 91.27 |
PGSC0003DMT400008800 | Potato | cytosol | 96.1 | 89.31 |
Zm00001d015426_P001 | Maize | cytosol | 22.38 | 21.67 |
GRMZM5G808402_P01 | Maize | cytosol, mitochondrion, plastid | 20.94 | 20.48 |
Zm00001d006403_P001 | Maize | plastid | 20.94 | 20.48 |
Zm00001d053765_P003 | Maize | cytosol | 25.26 | 19.81 |
Zm00001d050687_P001 | Maize | cytosol | 9.03 | 18.49 |
Zm00001d038929_P001 | Maize | mitochondrion | 20.33 | 17.9 |
Zm00001d009488_P001 | Maize | plasma membrane | 20.33 | 17.9 |
Zm00001d043834_P001 | Maize | mitochondrion | 20.33 | 17.4 |
Zm00001d000277_P001 | Maize | plastid | 18.69 | 16.13 |
Zm00001d020223_P001 | Maize | cytosol | 3.7 | 15.93 |
Zm00001d015427_P001 | Maize | extracellular, plastid | 2.67 | 10.83 |
Protein Annotations
KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | EntrezGene:100282598 | MapMan:24.1.1.2.2 | Gene3D:3.40.50.12240 | ProteinID:AQK82471.1 |
InterPro:ATPase_F1/V1/A1_a/bsu_N | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:ATPase_V1-cplx_bsu | InterPro:ATPase_a/bsu_AS | UniProt:B6T9C0 | EMBL:EU961585 |
GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0006139 |
GO:GO:0006810 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015991 | GO:GO:0015992 |
GO:GO:0016020 | GO:GO:0033180 | GO:GO:0046034 | GO:GO:1902600 | HAMAP:MF_00310 | InterPro:P-loop_NTPase |
PFAM:PF00006 | PFAM:PF02874 | PIRSF:PIRSF039114 | ScanProsite:PS00152 | PANTHER:PTHR43389 | PANTHER:PTHR43389:SF6 |
SUPFAM:SSF52540 | TIGRFAMs:TIGR01040 | UniParc:UPI000182BEAF | InterPro:V-ATPase_su_B/beta | EnsemblPlantsGene:Zm00001d036961 | EnsemblPlants:Zm00001d036961_P004 |
EnsemblPlants:Zm00001d036961_T004 | : | : | : | : | : |
Description
Putative ATPase%2C V1 complex%2C subunit B protein isoform 1%3B Putative ATPase%2C V1 complex%2C subunit B protein isoform 2%3B Vacuolar ATP synthase subunit B isoform 1
Coordinates
chr6:+:107437936..107445192
Molecular Weight (calculated)
54064.7 Da
IEP (calculated)
4.825
GRAVY (calculated)
-0.258
Length
487 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLVKEGVDM EEGTLEIGME YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKTL EKGKHAEGGE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RTGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV TQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQY YSRDASH
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKTL EKGKHAEGGE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RTGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV TQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQY YSRDASH
001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN
Arabidopsis Description
ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.