Factsheet for VIT_03s0038g02760.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068704	Potato	cytosol	96.11	97.91
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	95.9	97.7
Solyc01g111760.2.1	Tomato	plastid	95.49	97.29
CDY01384	Canola	cytosol	85.66	96.31
GSMUA_Achr7P09090_001	Banana	cytosol, plasma membrane	96.31	96.31
GSMUA_Achr2P16710_001	Banana	cytosol	96.31	96.31
KRH00994	Soybean	cytosol	96.31	96.11
KRH40221	Soybean	nucleus	96.11	95.91
TraesCS3D01G250900.1	Wheat	cytosol	95.9	95.9
KRG90658	Soybean	cytosol	95.9	95.9
TraesCS3A01G250500.1	Wheat	extracellular	95.7	95.7
KRH36093	Soybean	endoplasmic reticulum	95.7	95.7
Os01t0711000-01	Rice	plastid	95.49	95.49
Zm00001d036961_P004	Maize	plasma membrane, plastid	95.08	95.28
KXG20226	Sorghum	cytosol	95.08	95.28
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	95.08	95.08
TraesCS6A01G186300.1	Wheat	cytosol	95.08	95.08
TraesCS6B01G218100.1	Wheat	cytosol	95.08	95.08
CDX73218	Canola	cytosol	94.06	95.03
AT4G38510.5	Thale cress	cytosol	96.11	94.94
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	94.88	94.88
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	97.75	94.83
Bra025804.1-P	Field mustard	cytosol	78.48	94.8
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	94.67	94.67
TraesCS7D01G361000.1	Wheat	cytosol	94.67	94.67
OQU84653	Sorghum	cytosol	94.67	94.67
TraesCS7A01G362000.1	Wheat	cytosol	94.67	94.67
CDX87646	Canola	cytosol	94.67	94.67
Bra015797.1-P	Field mustard	cytosol	94.67	94.67
CDY54328	Canola	cytosol	94.06	94.44
CDY51327	Canola	cytosol	94.06	94.44
CDY31899	Canola	cytosol	93.65	94.03
CDX96645	Canola	cytosol	93.65	94.03
CDY29363	Canola	cytosol	93.24	93.62
Bra012223.1-P	Field mustard	endoplasmic reticulum	89.75	92.99
Zm00001d046336_P001	Maize	cytosol	94.88	92.97
HORVU3Hr1G067000.1	Barley	cytosol	47.95	90.7
PGSC0003DMT400008800	Potato	cytosol	96.11	89.5
VIT_06s0009g03730.t01	Wine grape	cytosol	16.39	88.89
HORVU3Hr1G067040.5	Barley	cytosol, plastid	95.9	88.3
HORVU7Hr1G087190.1	Barley	plastid	94.88	87.86
HORVU6Hr1G039890.3	Barley	mitochondrion	95.08	85.29
TraesCS3B01G280000.2	Wheat	cytosol	94.06	84.07
VIT_09s0054g00890.t01	Wine grape	extracellular	25.41	19.9
VIT_14s0068g01700.t01	Wine grape	cytosol	5.12	19.68
VIT_04s0008g02580.t01	Wine grape	cytosol	24.8	19.18
VIT_01s0011g04490.t01	Wine grape	mitochondrion	20.29	17.77
VIT_17s0000g02900.t01	Wine grape	mitochondrion	20.08	17.69
VIT_00s0332g00060.t01	Wine grape	mitochondrion	7.79	16.67

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:100243574	wikigene:100243574	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240
EMBL:AM449616	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	ProteinID:CAN67614
ProteinID:CAN67614.1	ProteinID:CBI37835	ProteinID:CBI37835.3	UniProt:D7U516	EMBL:FN596508	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139	GO:GO:0006810
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0015992	GO:GO:0016020
GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	EntrezGene:LOC100243574	wikigene:LOC100243574	HAMAP:MF_00310
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389
PANTHER:PTHR43389:SF6	SUPFAM:SSF52540	TIGR:TC52384	TIGR:TC53633	TIGRFAMs:TIGR01040	UniParc:UPI0001982E39
InterPro:V-ATPase_su_B/beta	ArrayExpress:VIT_03s0038g02760	EnsemblPlantsGene:VIT_03s0038g02760	EnsemblPlants:VIT_03s0038g02760.t01	unigene:Vvi.9029	RefSeq:XP_002280291
RefSeq:XP_002280291.1	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:1933544..1941003

Molecular Weight (calculated)

54289.9 Da

IEP (calculated)

4.779

GRAVY (calculated)

-0.257

Length

488 amino acids

Sequence
(BLAST)

001: MGVEQNNHDA EEGTLLVGME YRTVSGVAGP LVILEKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKSGSLLEDV
201: EEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHADVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ YYSREASN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.