CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	cytosol
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plasma membrane: 19658398
nucleus: 21132161
nucleus: 24385303
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 19658398 doi

S Komatsu, T Wada, Y Abaléa, MZ Nouri, Y Nanjo, N Nakayama, S Shimamura, R Yamamoto, T Nakamura, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00994	Soybean	cytosol	99.8	99.8
KRH36093	Soybean	endoplasmic reticulum	99.39	99.59
KRG90658	Soybean	cytosol	99.18	99.39
Solyc01g111760.2.1	Tomato	plastid	95.3	97.29
TraesCS3D01G250900.1	Wheat	cytosol	96.11	96.31
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.27	96.24
PGSC0003DMT400068704	Potato	cytosol	94.27	96.24
VIT_03s0038g02760.t01	Wine grape	cytosol	95.91	96.11
TraesCS3A01G250500.1	Wheat	extracellular	95.91	96.11
Os01t0711000-01	Rice	plastid	95.3	95.49
GSMUA_Achr5P22160_001	Banana	cytosol	95.09	95.29
OQU84653	Sorghum	cytosol	94.68	94.88
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.91	93.24
PGSC0003DMT400008800	Potato	cytosol	95.91	89.5
HORVU3Hr1G067040.5	Barley	cytosol, plastid	96.11	88.68
GSMUA_Achr8P05550_001	Banana	cytosol	96.11	85.14
TraesCS3B01G280000.2	Wheat	cytosol	94.27	84.43
KRH46991	Soybean	nucleus	25.77	20.22
KRH44667	Soybean	nucleus	25.77	20.22
KRH35827	Soybean	nucleus	20.65	18.07
KRG90945	Soybean	mitochondrion	20.65	18.07
KRH48739	Soybean	cytosol, mitochondrion	9.61	17.74
KRH18721	Soybean	cytosol	5.52	12.22

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:100814088	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	EMBL:ACUP02006028
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:GLYMA_09G245700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0016820	GO:GO:0033180	GO:GO:0046034
GO:GO:1902600	UniProt:I1L655	EnsemblPlants:KRH40221	ProteinID:KRH40221	ProteinID:KRH40221.1	ProteinID:KRH40222.1
HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152
PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI000233878A
InterPro:V-ATPase_su_B/beta	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:46765018..46771232

Molecular Weight (calculated)

54184.9 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.230

Length

489 amino acids

Sequence
(BLAST)

001: MGVAQNIPDA EEGTLEIGME YRTVSGVAGP LVILDKVKGP KFQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKFTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKSDNLLEGG
201: GEEDNFAIVF AAMGVNMETA QFFKRDFEEN GSMERVTLFL NLANDPTIER IITPRIALTT AEYLAYECGK HVLVILTDMS SYADALREVS AAREEVPGRR
301: GYPGYMYTDL ATIYERAGRI EGRKGSITQI PILTMPNDDI THPTPDLTGY ITEGQIYIDR QLYNRQIYPP INVLPSLSRL MKSAIGEGMT RKDHSDVSNQ
401: LYANYAIGKD VQAMKAVVGE EALSSEDLLY LEFLEKFERK FVAQGAYDTR NIFQSLDLAW TLLRIFPREL LHRIPAKTLD QFYSRDAGN

Best Arabidopsis Sequence Match ( AT4G38510.1 )
(BLAST)

001: MGAAENNLEM EGTLEIGMEY RTVSGVAGPL VILEKVKGPK YQEIVNIRLG DGTTRRGQVL EVDGEKAVVQ VFEGTSGIDN KYTTVQFTGE VLKTPVSLDM
101: LGRIFNGSGK PIDNGPPILP EAYLDISGSS INPSERTYPE EMIQTGISTI DVMNSIARGQ KIPLFSAAGL PHNEIAAQIC RQAGLVKRLE KSDNLLEHQE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV AQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.