CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
extracellular: 22945350
nucleus: 24385303
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
mitochondrion: 27780359
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 22945350 doi

C Liao, F Hochholdinger, C Li

Key Laboratory of Plant-Soil Interactions, Ministry of Education, Center for Resources, Environment and Food Security, China Agricultural University, Beijing, China.

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 24385303 doi

S Komatsu, S Hiraga, MZ Nouri

National Institute of Crop Science, National Agriculture and Food Research Organization, Kannondai 2-1-18, Tsukuba, 305-8518, Japan, skomatsu@affrc.go.jp.

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90945	Soybean	mitochondrion	98.03	98.03
CDX69928	Canola	cytosol	72.45	90.2
CDY44784	Canola	cytosol	72.45	90.2
CDY21559	Canola	cytosol	72.45	90.2
Zm00001d038929_P001	Maize	mitochondrion	87.84	88.79
Zm00001d009488_P001	Maize	plasma membrane	87.66	88.61
Os05t0553000-02	Rice	mitochondrion	86.94	88.04
TraesCS3B01G298000.1	Wheat	mitochondrion	85.69	86.93
TraesCS3A01G264700.1	Wheat	mitochondrion	85.51	86.75
HORVU3Hr1G063590.2	Barley	plasma membrane	85.51	86.75
HORVU1Hr1G083840.2	Barley	mitochondrion	85.51	86.28
TraesCS3D01G264800.2	Wheat	golgi	85.15	86.23
TraesCS1B01G400300.1	Wheat	cytosol	68.87	86.13
Zm00001d043834_P001	Maize	mitochondrion	87.3	85.76
TraesCS1A01G379000.1	Wheat	mitochondrion	84.62	85.53
CDX69929	Canola	mitochondrion	83.54	84.3
CDX78350	Canola	mitochondrion	83.36	84.12
CDY21558	Canola	mitochondrion	83.18	84.09
CDY44783	Canola	mitochondrion	83.18	84.09
AT5G08670.1	Thale cress	mitochondrion	83.54	83.99
AT5G08690.1	Thale cress	mitochondrion	83.54	83.99
Bra009360.1-P	Field mustard	mitochondrion	83.01	83.91
CDX78351	Canola	mitochondrion	83.36	83.81
CDX81118	Canola	mitochondrion	83.18	83.78
Bra009363.1-P	Field mustard	mitochondrion	83.18	83.78
Bra006013.1-P	Field mustard	mitochondrion	83.01	83.75
AT5G08680.1	Thale cress	mitochondrion	83.72	83.72
CDX81119	Canola	mitochondrion	83.18	83.63
CDY40737	Canola	mitochondrion	82.83	83.42
CDY40736	Canola	cytosol	82.83	83.42
Bra028648.1-P	Field mustard	mitochondrion	82.65	83.24
Bra028649.1-P	Field mustard	mitochondrion	80.32	79.61
KRH48739	Soybean	cytosol, mitochondrion	37.21	78.49
KRH18721	Soybean	cytosol	28.09	71.04
Bra006014.1-P	Field mustard	mitochondrion	83.18	63.01
KRH36093	Soybean	endoplasmic reticulum	18.07	20.7
KRG90658	Soybean	cytosol	18.07	20.7
KRH40221	Soybean	nucleus	18.07	20.65
KRH00994	Soybean	cytosol	18.07	20.65
KRH46991	Soybean	nucleus	22.0	19.74
KRH44667	Soybean	nucleus	22.0	19.74

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	EntrezGene:100797948	MapMan:2.4.6.2.2	Gene3D:2.40.10.170
Gene3D:3.40.50.300	UniProt:A0A0R4J4C8	InterPro:AAA+_ATPase	EMBL:ACUP02006703	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:GLYMA_10G267200
GO:GO:0000166	GO:GO:0000275	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0006754	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0015986	GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887
GO:GO:0045261	GO:GO:0046034	GO:GO:0046933	GO:GO:0099132	GO:GO:1902600	InterPro:IPR024034
EnsemblPlants:KRH35827	ProteinID:KRH35827	ProteinID:KRH35827.1	HAMAP:MF_01347	InterPro:P-loop_NTPase	PFAM:PF00006
PFAM:PF02874	PFAM:PF11421	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44
MetaCyc:PWY-7219	SMART:SM00382	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039
UniParc:UPI00019AA94A	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:49031152..49035297

Molecular Weight (calculated)

59839.7 Da

IEP (calculated)

6.047

GRAVY (calculated)

-0.082

Length

559 amino acids

Sequence
(BLAST)

001: MASRRLVSSL IRSSLRRSQS KPSISASTSR LTSSNRASPH GYLLNRVAEY ATAAAAATTP PSPPPPGKKE LGGGGKITDE FTGKGAIGQV CQVIGAVVDV
101: RFDEGLPPIM TALEVLDHSS RLVLEVAQHL GEGVVRTIAM DATEGVVRGW RVLNTGSPIT VPVGRATLGR IINVIGEPID AKGEINTEHY LPIHREAPAF
201: VEQETAQQIL VTGIKVVDLL APYQRGGKIG LFGGAGVGKT VLIMELINNV AKAHGGFSVF AGVGERTREG NDLYREMIES GVIKLDDKQS ESKCALVYGQ
301: MNEPPGARAR VGLTGLTVAE HFRDAEGQDV LLFVDNIFRF TQANSEVSAL LGRIPSAVGY QPTLSTDLGA LQERITTTKK GSITSVQAIY VPADDLTDPA
401: PATTFAHLDA TTVLSRQISE LGIYPAVDPL DSTSRMLSPL ILGADHYETA RGVQKVLQNY KNLQDIIAIL GMDELSEDDK LTVARARKIQ RFLSQPFHVA
501: EVFTGAPGKY VELKENVASF QGVLDGKYDD LPEQSFYMVG GIEEVIAKAE KIAKESAAS

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.