CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90658	Soybean	cytosol	99.8	99.8
KRH40221	Soybean	nucleus	99.59	99.39
KRH00994	Soybean	cytosol	99.39	99.18
Solyc01g111760.2.1	Tomato	plastid	95.7	97.49
TraesCS3D01G250900.1	Wheat	cytosol	96.52	96.52
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.67	96.45
PGSC0003DMT400068704	Potato	cytosol	94.67	96.45
TraesCS3A01G250500.1	Wheat	extracellular	96.31	96.31
VIT_03s0038g02760.t01	Wine grape	cytosol	95.7	95.7
Os01t0711000-01	Rice	plastid	95.49	95.49
GSMUA_Achr5P22160_001	Banana	cytosol	95.29	95.29
OQU84653	Sorghum	cytosol	94.88	94.88
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	96.11	93.24
PGSC0003DMT400008800	Potato	cytosol	96.31	89.69
HORVU3Hr1G067040.5	Barley	cytosol, plastid	96.52	88.87
GSMUA_Achr8P05550_001	Banana	cytosol	96.31	85.14
TraesCS3B01G280000.2	Wheat	cytosol	94.67	84.62
KRH46991	Soybean	nucleus	25.82	20.22
KRH44667	Soybean	nucleus	25.82	20.22
KRH35827	Soybean	nucleus	20.7	18.07
KRG90945	Soybean	mitochondrion	20.7	18.07
KRH48739	Soybean	cytosol, mitochondrion	9.63	17.74
KRH18721	Soybean	cytosol	5.53	12.22

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	EntrezGene:100791429	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	EMBL:ACUP02006721
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlantsGene:GLYMA_10G283200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0016820	GO:GO:0033180	GO:GO:0046034
GO:GO:1902600	UniProt:I1LF60	EnsemblPlants:KRH36093	ProteinID:KRH36093	ProteinID:KRH36093.1	ProteinID:KRH36094.1
ProteinID:KRH36095.1	HAMAP:MF_00310	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114
ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01040
UniParc:UPI000233D3B7	InterPro:V-ATPase_su_B/beta	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:50381204..50387773

Molecular Weight (calculated)

54188.9 Da

IEP (calculated)

4.651

GRAVY (calculated)

-0.230

Length

488 amino acids

Sequence
(BLAST)

001: MGVAENIPDM EEGTLEIGME YRTVSGVAGP LVILDKVKGP KFQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKFTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKSDNLLEGG
201: EEDNFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LYNRQIYPPI NVLPSLSRLM KSAIGEGMTR KDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLEKFERKF VAQGAYDTRN IFQSLDLAWT LLRIFPRELL HRIPAKTLDQ FYSRDAGN

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.