Factsheet for Os01t0711000-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 1
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

plastid: 21433289
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G250900.1	Wheat	cytosol	97.75	97.75
TraesCS3A01G250500.1	Wheat	extracellular	97.54	97.54
Solyc01g111760.2.1	Tomato	plastid	95.29	97.08
PGSC0003DMT400068704	Potato	cytosol	95.08	96.87
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	94.88	96.66
GSMUA_Achr5P22160_001	Banana	cytosol	95.7	95.7
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	95.7	95.7
KRG90658	Soybean	cytosol	95.7	95.7
KRH00994	Soybean	cytosol	95.7	95.5
OQU84653	Sorghum	cytosol	95.49	95.49
VIT_03s0038g02760.t01	Wine grape	cytosol	95.49	95.49
KRH36093	Soybean	endoplasmic reticulum	95.49	95.49
KRH40221	Soybean	nucleus	95.49	95.3
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	95.08	92.25
HORVU3Hr1G067040.5	Barley	cytosol, plastid	97.54	89.81
PGSC0003DMT400008800	Potato	cytosol	95.7	89.12
TraesCS3B01G280000.2	Wheat	cytosol	96.11	85.9
GSMUA_Achr8P05550_001	Banana	cytosol	96.52	85.33
Os06t0120732-00	Rice	cytosol	8.2	23.81
Os12t0207500-00	Rice	extracellular, plastid	16.6	23.41
Os10t0355800-00	Rice	cytosol, extracellular, plastid	18.65	21.67
CAA34003	Rice	extracellular	20.9	20.48
Os06t0662000-01	Rice	nucleus, plasma membrane	25.61	20.16
Os02t0175400-01	Rice	plasma membrane	25.61	20.13
Os05t0553000-02	Rice	mitochondrion	20.49	18.12

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	EntrezGene:4327833	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	ProteinID:BAB39419.1	ProteinID:BAB89101.1	ProteinID:BAF05957.1
ProteinID:BAS73980.1	ProteinID:EEE55281.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0006139	GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0015991	GO:GO:0016020	GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	HAMAP:MF_00310
EnsemblPlantsGene:Os01g0711000	EnsemblPlants:Os01t0711000-01	InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114
ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6	UniProt:Q9ASE0	SUPFAM:SSF52540	TIGRFAMs:TIGR01040
UniParc:UPI000009DCA9	InterPro:V-ATPase_su_B/beta	RefSeq:XP_015619280.1	RefSeq:XP_015619950.1	:	:

Description

Similar to Vacuolar ATP synthase subunit B isoform 2 (EC 3.6.3.14) (V-ATPase B subunit 2) (Vacuolar proton pump B subunit 2). (Os01t0711000-01)

Coordinates

chr1:+:29536726..29542409

Molecular Weight (calculated)

54282.8 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.260

Length

488 amino acids

Sequence
(BLAST)

001: MVVANGNVDT EEGTLEIGME YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRVFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKRL EKSDNILESS
201: EDENFAIVFA AMGVNMETAQ FFKRDFEENG SMERVTLFLN LANDPTIERI ITPRIALTTA EYLAYECGKH VLVILTDMSS YADALREVSA AREEVPGRRG
301: YPGYMYTDLA TIYERAGRIE GRKGSITQIP ILTMPNDDIT HPTPDLTGYI TEGQIYIDRQ LHNRQIYPPI NVLPSLSRLM KSAIGEGMTR RDHSDVSNQL
401: YANYAIGKDV QAMKAVVGEE ALSSEDLLYL EFLDKFERKF VTQGAYDTRN IFQSLDLAWS LLRIFPRELL HRIPAKTLDQ YYSRDASH

Best Arabidopsis Sequence Match ( AT4G38510.5 )
(BLAST)

001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN

Arabidopsis Description

ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.