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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 4
  • plastid 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion, plastid
BaCelLo:cytosol
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
EER90021

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G76030.1 EER90021 AT5G35410.1 17875927
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d036961_P004 Maize plasma membrane, plastid 100.0 100.0
Os06t0568200-01 Rice nucleus, plasma membrane, vacuole 98.77 98.57
TraesCS7D01G361000.1 Wheat cytosol 98.56 98.36
TraesCS7B01G265500.1 Wheat golgi, nucleus, plastid 98.56 98.36
TraesCS7A01G362000.1 Wheat cytosol 98.36 98.16
Solyc01g111760.2.1 Tomato plastid 95.89 97.49
Zm00001d046336_P001 Maize cytosol 99.59 97.39
OQU84653 Sorghum cytosol 97.33 97.13
PGSC0003DMT400068704 Potato cytosol 95.28 96.87
Solyc10g055670.1.1 Tomato cytosol, nucleus, unclear 95.07 96.66
Bra025804.1-P Field mustard cytosol 79.67 96.04
CDY01384 Canola cytosol 85.22 95.62
VIT_03s0038g02760.t01 Wine grape cytosol 95.28 95.08
CDX73218 Canola cytosol 94.25 95.03
AT1G20260.1 Thale cress cytosol 94.87 94.87
AT1G76030.1 Thale cress cytosol 94.46 94.65
CDY54328 Canola cytosol 94.46 94.65
Bra015797.1-P Field mustard cytosol 94.66 94.47
CDX87646 Canola cytosol 94.66 94.47
CDY51327 Canola cytosol 94.25 94.44
CDX96645 Canola cytosol 94.05 94.24
CDY31899 Canola cytosol 94.05 94.24
CDY29363 Canola cytosol 93.63 93.83
Bra012223.1-P Field mustard endoplasmic reticulum 89.32 92.36
VIT_18s0001g01020.t01 Wine grape cytosol, extracellular 95.07 92.05
HORVU7Hr1G087190.1 Barley plastid 98.77 91.27
PGSC0003DMT400008800 Potato cytosol 96.1 89.31
OQU86829 Sorghum cytosol 6.37 22.3
EER90164 Sorghum cytosol 25.46 19.97
EES04615 Sorghum cytosol 25.46 19.97
OQU84606 Sorghum cytosol 9.45 18.18
KXG22502 Sorghum mitochondrion 20.33 17.9
KXG33146 Sorghum mitochondrion 20.33 17.87
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14MapMan:24.1.1.2.2Gene3D:3.40.50.12240UniProt:A0A194YJS5InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bdInterPro:ATPase_V1-cplx_bsuInterPro:ATPase_a/bsu_ASGO:GO:0000166GO:GO:0003674GO:GO:0003824
GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0006139GO:GO:0006754GO:GO:0006810GO:GO:0006811GO:GO:0008150
GO:GO:0008152GO:GO:0009058GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009579
GO:GO:0009987GO:GO:0015986GO:GO:0015991GO:GO:0015992GO:GO:0016020GO:GO:0016787
GO:GO:0016820GO:GO:0032559GO:GO:0033180GO:GO:0045261GO:GO:0046034GO:GO:0046933
GO:GO:0099132GO:GO:1902600ProteinID:KXG20224.1ProteinID:KXG20225.1EnsemblPlants:KXG20226ProteinID:KXG20226
ProteinID:KXG20226.1HAMAP:MF_00310InterPro:P-loop_NTPasePFAM:PF00006PFAM:PF02874PIRSF:PIRSF039114
ScanProsite:PS00152PANTHER:PTHR43389PANTHER:PTHR43389:SF6MetaCyc:PWY-7219EnsemblPlantsGene:SORBI_3010G172500SUPFAM:SSF52540
TIGRFAMs:TIGR01040UniParc:UPI000182BEAFInterPro:V-ATPase_su_B/beta:::
Description
hypothetical protein
Coordinates
chr10:-:50687888..50695072
Molecular Weight (calculated)
54064.7 Da
IEP (calculated)
4.825
GRAVY (calculated)
-0.258
Length
487 amino acids
Sequence
(BLAST)
001: MGLVKEGVDM EEGTLEIGME YRTVSGVAGP LVILDKVKGP KYQEIVNIRL GDGTTRRGQV LEVDGEKAVV QVFEGTSGID NKYTTVQFTG EVLKTPVSLD
101: MLGRIFNGSG KPIDNGPPIL PEAYLDISGS SINPSERTYP EEMIQTGIST IDVMNSIARG QKIPLFSAAG LPHNEIAAQI CRQAGLVKTL EKGKHAEGGE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RTGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV TQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQY YSRDASH
Best Arabidopsis Sequence Match ( AT1G20260.1 )
(BLAST)
001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS
Arabidopsis Description
VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.