CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012223.1-P	Field mustard	endoplasmic reticulum	100.0	92.14
CDY31899	Canola	cytosol	99.77	89.09
CDY51327	Canola	cytosol	99.77	89.09
CDX96645	Canola	cytosol	99.77	89.09
CDY54328	Canola	cytosol	99.54	88.89
AT1G20260.1	Thale cress	cytosol	99.31	88.5
CDY29363	Canola	cytosol	98.85	88.27
CDX73218	Canola	cytosol	98.16	88.2
CDX87646	Canola	cytosol	98.39	87.5
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	96.31	87.27
PGSC0003DMT400068704	Potato	cytosol	96.31	87.27
Solyc01g111760.2.1	Tomato	plastid	96.08	87.06
TraesCS6D01G173400.1	Wheat	cytosol, nucleus, plastid, unclear	96.54	85.86
TraesCS6B01G218100.1	Wheat	cytosol	96.54	85.86
TraesCS6A01G186300.1	Wheat	cytosol	96.54	85.86
VIT_03s0038g02760.t01	Wine grape	cytosol	96.31	85.66
TraesCS7B01G265500.1	Wheat	golgi, nucleus, plastid	95.85	85.25
Os06t0568200-01	Rice	nucleus, plasma membrane, vacuole	95.85	85.25
TraesCS7A01G362000.1	Wheat	cytosol	95.85	85.25
TraesCS7D01G361000.1	Wheat	cytosol	95.85	85.25
KXG20226	Sorghum	cytosol	95.62	85.22
Zm00001d036961_P004	Maize	plasma membrane, plastid	95.62	85.22
VIT_18s0001g01020.t01	Wine grape	cytosol, extracellular	96.77	83.5
Zm00001d046336_P001	Maize	cytosol	95.62	83.33
PGSC0003DMT400008800	Potato	cytosol	96.08	79.58
HORVU7Hr1G087190.1	Barley	plastid	95.85	78.94
HORVU6Hr1G039890.3	Barley	mitochondrion	96.54	77.02
CDX99333	Canola	mitochondrion	16.36	31.28
CDX69928	Canola	cytosol	21.66	20.94
CDY21559	Canola	cytosol	21.66	20.94
CDY44784	Canola	cytosol	21.66	20.94
CDY67023	Canola	cytosol	21.43	18.34
CDX88489	Canola	cytosol	25.81	17.98
CDX87424	Canola	cytosol	25.81	17.98
CDX79274	Canola	cytosol	25.58	17.82
CDY57944	Canola	cytosol	25.58	17.82
CDY44783	Canola	mitochondrion	21.66	17.0
CDY21558	Canola	mitochondrion	21.66	17.0
CDX69929	Canola	mitochondrion	21.66	16.97
CDX78350	Canola	mitochondrion	21.66	16.97
CDX81118	Canola	mitochondrion	21.66	16.94
CDY40737	Canola	mitochondrion	21.66	16.94
CDY40736	Canola	cytosol	21.66	16.94
CDX78351	Canola	mitochondrion	21.66	16.91
CDX81119	Canola	mitochondrion	21.66	16.91
CDY17918	Canola	cytosol	11.98	16.35
CDY38701	Canola	plastid	20.28	14.64
CDX98579	Canola	plastid	20.28	14.64
CDX99946	Canola	plastid	20.28	14.64
CDY21198	Canola	cytosol	6.91	12.99
CDY17919	Canola	cytosol	3.92	11.56
CDX77882	Canola	mitochondrion	4.38	8.8

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	MapMan:24.1.1.2.2	Gene3D:3.40.50.12240	GO:A0A078EKW0	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_V1-cplx_bsu	InterPro:ATPase_a/bsu_AS	EnsemblPlants:CDY01384	ProteinID:CDY01384	ProteinID:CDY01384.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0016020
GO:GO:0033180	GO:GO:0046034	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00112364001	HAMAP:MF_00310	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PIRSF:PIRSF039114	ScanProsite:PS00152	PANTHER:PTHR43389	PANTHER:PTHR43389:SF6
MetaCyc:PWY-7219	SUPFAM:SSF52540	TIGRFAMs:TIGR01040	UniParc:UPI0004EE391E	InterPro:V-ATPase_su_B/beta	:

Description

BnaA07g11570D

Coordinates

chrLK031926:-:615868..618661

Molecular Weight (calculated)

48638.1 Da

IEP (calculated)

4.883

GRAVY (calculated)

-0.280

Length

434 amino acids

Sequence
(BLAST)

001: MRRGQVLEVD GEKAVVQVFE GTSGIDNKFT TVQFTGEVLK TPVSQDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM
101: NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKTE NLIEDHGEDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR
201: IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ
301: IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVMQG AYDTRNIFQS
401: LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DSTS

Best Arabidopsis Sequence Match ( AT1G20260.1 )
(BLAST)

001: MVETSIDMEE GTLEIGMEYR TVSGVAGPLV ILDKVKGPKY QEIVNIRLGD GSTRRGQVLE VDGEKAVVQV FEGTSGIDNK FTTVQFTGEV LKTPVSLDML
101: GRIFNGSGKP IDNGPPILPE AYLDISGSSI NPSERTYPEE MIQTGISTID VMNSIARGQK IPLFSAAGLP HNEIAAQICR QAGLVKRLEK TENLIQEDHG
201: EDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRK DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV MQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDSTS

Arabidopsis Description

VHA-B3VAB3 [Source:UniProtKB/TrEMBL;Acc:A0A178WCF6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.