CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21198	Canola	cytosol	88.44	56.28
CDY38701	Canola	plastid	87.07	21.3
CDX99946	Canola	plastid	87.07	21.3
CDX98579	Canola	plastid	87.07	21.3
CDY44783	Canola	mitochondrion	36.05	9.58
CDY21558	Canola	mitochondrion	36.05	9.58
CDX69929	Canola	mitochondrion	36.05	9.57
CDX78350	Canola	mitochondrion	36.05	9.57
CDY40737	Canola	mitochondrion	36.05	9.55
CDY40736	Canola	cytosol	36.05	9.55
CDX81118	Canola	mitochondrion	36.05	9.55
CDX81119	Canola	mitochondrion	36.05	9.53
CDX78351	Canola	mitochondrion	36.05	9.53
CDY44784	Canola	cytosol	27.89	9.13
CDX69928	Canola	cytosol	27.89	9.13
CDY21559	Canola	cytosol	27.89	9.13
CDX99333	Canola	mitochondrion	12.93	8.37
CDX73218	Canola	cytosol	17.69	5.38
CDX87646	Canola	cytosol	17.69	5.33
CDY67023	Canola	cytosol	17.69	5.13
CDY29363	Canola	cytosol	16.33	4.94
CDY54328	Canola	cytosol	16.33	4.94
CDY51327	Canola	cytosol	16.33	4.94
CDY31899	Canola	cytosol	16.33	4.94
CDX96645	Canola	cytosol	16.33	4.94
CDX79274	Canola	cytosol	17.69	4.17
CDX88489	Canola	cytosol	17.69	4.17
CDY57944	Canola	cytosol	17.69	4.17
CDX87424	Canola	cytosol	17.69	4.17
CDY01384	Canola	cytosol	11.56	3.92
GSMUA_Achr1P01800_001	Banana	mitochondrion	0.68	1.16
PGSC0003DMT400002642	Potato	cytosol	1.36	0.49
CDX77882	Canola	mitochondrion	0.68	0.46
CDY17918	Canola	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0
Solyc12g042230.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:2.40.10.170	MapMan:35.1	GO:A0A078FXM6	UniProt:A0A078FXM6
InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	EnsemblPlants:CDY17919	ProteinID:CDY17919	ProteinID:CDY17919.1	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015992	GO:GO:0046034
GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00002267001	PFAM:PF02874	PANTHER:PTHR15184	PANTHER:PTHR15184:SF43	MetaCyc:PWY-7219
SUPFAM:SSF50615	UniParc:UPI0004EF3591	:	:	:	:

Description

BnaC04g03000DBnaC04g03000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXM6]

Coordinates

chrLK032079:-:485428..486037

Molecular Weight (calculated)

15812.4 Da

IEP (calculated)

8.466

GRAVY (calculated)

0.076

Length

147 amino acids

Sequence
(BLAST)

001: MRINPTTSDP AVSIREKNNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPIFWPLIV VGEKSDYSVG LAWVKQY

Best Arabidopsis Sequence Match ( ATCG00480.1 )
(BLAST)

001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK

Arabidopsis Description

ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.