Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068704 | Potato | cytosol | 94.33 | 97.29 |
| Solyc01g111760.2.1 | Tomato | plastid | 94.33 | 97.29 |
| Solyc10g055670.1.1 | Tomato | cytosol, nucleus, unclear | 94.33 | 97.29 |
| GSMUA_Achr7P09090_001 | Banana | cytosol, plasma membrane | 95.95 | 97.13 |
| GSMUA_Achr2P16710_001 | Banana | cytosol | 95.34 | 96.52 |
| VIT_03s0038g02760.t01 | Wine grape | cytosol | 94.94 | 96.11 |
| AT1G76030.1 | Thale cress | cytosol | 94.13 | 95.68 |
| AT1G20260.1 | Thale cress | cytosol | 94.13 | 95.48 |
| VIT_18s0001g01020.t01 | Wine grape | cytosol, extracellular | 95.34 | 93.64 |
| PGSC0003DMT400008800 | Potato | cytosol | 95.55 | 90.08 |
| AT1G78900.1 | Thale cress | cytosol | 25.1 | 19.9 |
| ATCG00480.1 | Thale cress | cytosol | 19.64 | 19.48 |
| AT5G08670.1 | Thale cress | mitochondrion | 20.45 | 18.17 |
| AT5G08690.1 | Thale cress | mitochondrion | 20.45 | 18.17 |
| AT5G08680.1 | Thale cress | mitochondrion | 20.45 | 18.07 |
Protein Annotations
| KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | MapMan:24.1.1.2.2 | Gene3D:3.40.50.12240 | EntrezGene:830008 | ProteinID:AEE86936.1 |
| ProteinID:AEE86937.1 | ProteinID:AEE86938.1 | ProteinID:AEE86939.1 | ProteinID:AEE86940.1 | EMBL:AK222158 | EMBL:AK317281 |
| EMBL:AK317596 | ArrayExpress:AT4G38510 | EnsemblPlantsGene:AT4G38510 | RefSeq:AT4G38510 | TAIR:AT4G38510 | RefSeq:AT4G38510-TAIR-G |
| EnsemblPlants:AT4G38510.5 | TAIR:AT4G38510.5 | InterPro:ATPase_F1/V1/A1_a/bsu_N | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:ATPase_V1-cplx_bsu | InterPro:ATPase_a/bsu_AS |
| EMBL:AY039518 | EMBL:AY045609 | EMBL:AY059167 | EMBL:AY090334 | Unigene:At.48961 | ProteinID:CAB37507.1 |
| ProteinID:CAB80515.1 | UniProt:F4JTQ0 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005794 | GO:GO:0006139 | GO:GO:0006810 | GO:GO:0006811 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009536 | GO:GO:0009941 | GO:GO:0009987 | GO:GO:0015991 |
| GO:GO:0015992 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 | GO:GO:0030835 | GO:GO:0033180 |
| GO:GO:0046034 | GO:GO:0051015 | GO:GO:0051017 | GO:GO:0051693 | GO:GO:1902600 | HAMAP:MF_00310 |
| RefSeq:NP_001031807.1 | RefSeq:NP_001031808.1 | RefSeq:NP_001190954.1 | RefSeq:NP_195563.1 | RefSeq:NP_974707.1 | ProteinID:OAO99718.1 |
| InterPro:P-loop_NTPase | PFAM:PF00006 | PFAM:PF02874 | PIRSF:PIRSF039114 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00152 | PANTHER:PTHR43389 |
| PANTHER:PTHR43389:SF6 | SUPFAM:SSF52540 | TIGRFAMs:TIGR01040 | UniParc:UPI0001E92FA1 | InterPro:V-ATPase_su_B/beta | : |
Description
ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
Coordinates
chr4:-:18011117..18015171
Molecular Weight (calculated)
55181.1 Da
IEP (calculated)
4.894
GRAVY (calculated)
-0.290
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MERIKSKMGA AENNLEMEGT LEIGMEYRTV SGVAGPLVIL EKVKGPKYQE IVNIRLGDGT TRRGQVLEVD GEKAVVQVFE GTSGIDNKYT TVQFTGEVLK
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN
101: TPVSLDMLGR IFNGSGKPID NGPPILPEAY LDISGSSINP SERTYPEEMI QTGISTIDVM NSIARGQKIP LFSAAGLPHN EIAAQICRQA GLVKRLEKSD
201: NLLEHQEDDN FAIVFAAMGV NMETAQFFKR DFEENGSMER VTLFLNLAND PTIERIITPR IALTTAEYLA YECGKHVLVI LTDMSSYADA LREVSAAREE
301: VPGRRGYPGY MYTDLATIYE RAGRIEGRKG SITQIPILTM PNDDITHPTP DLTGYITEGQ IYIDRQLHNR QIYPPINVLP SLSRLMKSAI GEGMTRRDHS
401: DVSNQLYANY AIGKDVQAMK AVVGEEALSS EDLLYLEFLD KFERKFVAQG AYDTRNIFQS LDLAWTLLRI FPRELLHRIP AKTLDQFYSR DTTN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.