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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • vacuole 1
  • cytosol 2
  • nucleus 1
  • mitochondrion 1
  • extracellular 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, extracellular, mitochondrion, nucleus, plastid, vacuole
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:extracellular
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX99333 Canola mitochondrion 50.66 33.92
Bra025804.1-P Field mustard cytosol 43.42 16.34
Bra012223.1-P Field mustard endoplasmic reticulum 45.39 14.65
Bra015797.1-P Field mustard cytosol 44.08 13.73
Bra006013.1-P Field mustard mitochondrion 13.82 3.79
Bra009363.1-P Field mustard mitochondrion 13.82 3.78
Bra028648.1-P Field mustard mitochondrion 13.82 3.78
Bra008385.1-P Field mustard cytosol 14.47 3.74
Bra028649.1-P Field mustard mitochondrion 13.82 3.72
Bra009360.1-P Field mustard mitochondrion 13.16 3.62
Bra003633.1-P Field mustard cytosol 14.47 3.53
Bra035074.1-P Field mustard cytosol 14.47 3.53
Bra006014.1-P Field mustard mitochondrion 13.82 2.85
Protein Annotations
EnsemblPlants:Bra005634.1EnsemblPlants:Bra005634.1-PEnsemblPlantsGene:Bra005634Gene3D:3.40.50.12240InterPro:V-ATPase_su_B/betaPANTHER:PTHR43389
PANTHER:PTHR43389:SF6UniParc:UPI00025477E6UniProt:M4CN46MapMan:35.1::
Description
AT4G38510 (E=6e-014) | vacuolar ATP synthase subunit B, putative / V-ATPase B subunit, putative / vacuolar proton pump B subunit, putative / V-ATPase 57 kDa subunit, putative
Coordinates
chrA05:+:6649118..6649940
Molecular Weight (calculated)
17449.2 Da
IEP (calculated)
8.321
GRAVY (calculated)
0.097
Length
152 amino acids
Sequence
(BLAST)
001: MRRGQVMEVD GEKAVVQGNW LYRFNVLNKL IFFWFQVFER TSEIDTVQFT ELLKTHVSQL MLGRIFNGSR KTIDYGPPIL PEAYLDISDV HETIPEGINL
101: RGDINVCAKS SFLRYWFSLD INCCCFIFSR KSSSAAGLVA TVAKKTLNWL VL
Best Arabidopsis Sequence Match ( AT4G38510.1 )
(BLAST)
001: MGAAENNLEM EGTLEIGMEY RTVSGVAGPL VILEKVKGPK YQEIVNIRLG DGTTRRGQVL EVDGEKAVVQ VFEGTSGIDN KYTTVQFTGE VLKTPVSLDM
101: LGRIFNGSGK PIDNGPPILP EAYLDISGSS INPSERTYPE EMIQTGISTI DVMNSIARGQ KIPLFSAAGL PHNEIAAQIC RQAGLVKRLE KSDNLLEHQE
201: DDNFAIVFAA MGVNMETAQF FKRDFEENGS MERVTLFLNL ANDPTIERII TPRIALTTAE YLAYECGKHV LVILTDMSSY ADALREVSAA REEVPGRRGY
301: PGYMYTDLAT IYERAGRIEG RKGSITQIPI LTMPNDDITH PTPDLTGYIT EGQIYIDRQL HNRQIYPPIN VLPSLSRLMK SAIGEGMTRR DHSDVSNQLY
401: ANYAIGKDVQ AMKAVVGEEA LSSEDLLYLE FLDKFERKFV AQGAYDTRNI FQSLDLAWTL LRIFPRELLH RIPAKTLDQF YSRDTTN
Arabidopsis Description
ATPase, V1 complex, subunit B protein [Source:UniProtKB/TrEMBL;Acc:F4JTQ0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.