Factsheet for PGSC0003DMT400015365

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 8

Predictors

GFP

MS/MS

Papers

mitochondrion: 14983062

msms PMID: 14983062 doi

Y Balmer, WH Vensel, CK Tanaka, WJ Hurkman, E Gelhaye, N Rouhier, JP Jacquot, W Manieri, P Schürmann, M Droux, BB Buchanan

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g007550.2.1	Tomato	plastid	99.29	99.29
PGSC0003DMT400078507	Potato	cytosol	94.48	95.5
CDX69928	Canola	cytosol	72.95	91.31
CDY44784	Canola	cytosol	72.95	91.31
CDY21559	Canola	cytosol	72.95	91.31
KXG22502	Sorghum	mitochondrion	88.26	89.69
KXG33146	Sorghum	mitochondrion	88.26	89.53
Zm00001d038929_P001	Maize	mitochondrion	88.08	89.51
Zm00001d009488_P001	Maize	plasma membrane	87.9	89.33
Os05t0553000-02	Rice	mitochondrion	87.54	89.13
GSMUA_Achr3P20950_001	Banana	mitochondrion	87.54	88.49
TraesCS1B01G400300.1	Wheat	cytosol	70.28	88.37
PGSC0003DMT400078610	Potato	mitochondrion	86.48	88.2
TraesCS3B01G298000.1	Wheat	mitochondrion	86.3	88.02
HORVU3Hr1G063590.2	Barley	plasma membrane	86.3	88.02
TraesCS3D01G264800.2	Wheat	golgi	85.77	87.32
HORVU1Hr1G083840.2	Barley	mitochondrion	85.77	87.0
Zm00001d043834_P001	Maize	mitochondrion	87.72	86.64
AT5G08670.1	Thale cress	mitochondrion	82.74	83.63
AT5G08690.1	Thale cress	mitochondrion	82.74	83.63
Bra009363.1-P	Field mustard	mitochondrion	82.56	83.6
CDX69929	Canola	mitochondrion	82.38	83.57
CDY21558	Canola	mitochondrion	82.21	83.54
AT5G08680.1	Thale cress	mitochondrion	83.1	83.54
CDY44783	Canola	mitochondrion	82.03	83.36
CDX78351	Canola	mitochondrion	82.38	83.27
CDX78350	Canola	mitochondrion	82.03	83.21
Bra009360.1-P	Field mustard	mitochondrion	81.85	83.18
CDX81118	Canola	mitochondrion	82.03	83.06
CDX81119	Canola	mitochondrion	82.03	82.91
Bra006013.1-P	Field mustard	mitochondrion	81.67	82.85
CDY40737	Canola	mitochondrion	81.67	82.7
CDY40736	Canola	cytosol	81.67	82.7
Bra028648.1-P	Field mustard	mitochondrion	81.49	82.52
Bra028649.1-P	Field mustard	mitochondrion	79.18	78.9
KRH48739	Soybean	cytosol, mitochondrion	35.23	74.72
TraesCS4A01G151900.1	Wheat	cytosol, mitochondrion, plastid	16.73	72.31
KRH18721	Soybean	cytosol	25.98	66.06
Bra006014.1-P	Field mustard	mitochondrion	82.21	62.6
PGSC0003DMT400002642	Potato	cytosol	40.75	56.13
PGSC0003DMT400074197	Potato	cytosol	22.42	20.22
PGSC0003DMT400068136	Potato	cytosol	22.24	20.06
PGSC0003DMT400068704	Potato	cytosol	16.73	19.62
PGSC0003DMT400008800	Potato	cytosol	17.62	18.89

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.10.910	Gene3D:1.10.1140.10	EntrezGene:102584460	MapMan:2.4.6.2.2
Gene3D:2.40.10.170	Gene3D:3.40.50.300	InterPro:AAA+_ATPase	InterPro:ATP_synth_F1_beta_su	InterPro:ATP_synth_F1_bsu	InterPro:ATPase_F1/V1/A1_a/bsu_N
InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0000275
GO:GO:0003674	GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0006754
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015986
GO:GO:0015992	GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0045261	GO:GO:0046034
GO:GO:0046933	GO:GO:0099132	GO:GO:1902600	InterPro:IPR024034	UniProt:M1A5X1	HAMAP:MF_01347
InterPro:P-loop_NTPase	PFAM:PF00006	PFAM:PF02874	PFAM:PF11421	EnsemblPlantsGene:PGSC0003DMG400005994	PGSC:PGSC0003DMG400005994
EnsemblPlants:PGSC0003DMT400015365	PIRSF:PIRSF039072	ScanProsite:PS00152	PANTHER:PTHR15184	PANTHER:PTHR15184:SF44	SMART:SM00382
SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01039	UniParc:UPI000295BBA4	RefSeq:XP_006360427.1
SEG:seg	:	:	:	:	:

Description

ATP synthase subunit beta, mitochondrial [Source:PGSC_GENE;Acc:PGSC0003DMG400005994]

Coordinates

chr4:+:1969414..1973653

Molecular Weight (calculated)

59850.7 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.077

Length

562 amino acids

Sequence
(BLAST)

001: MASRRLIASL LRSSAQRGAG SGGGPISRSS IANSIARPAS RASPKGFLLN RAVQYATSAA APASKPSTPP KSSDSEASGK ITDEFTGAGA IGKVCQVIGA
101: VVDVRFDDGL PPILTALEVL DNQIRLVLEV AQHLGENMVR TIAMDGTEGL VRGQPVLNTG SPITVPVGRS TLGRIMNVIG EAIDERGPIT TDHFLPIHRE
201: APAFVEQATE QQILVTGIKV VDLLAPYQRG GKIGLFGGAG VGKTVLIMEL INNVAKAHGG FSVFAGVGER TREGNDLYRE MIESGVIKLG EKQSESKCAL
301: VYGQMNEPPG ARARVGLTGL TVAEHFRDAE GQDVLLFIDN IFRFTQANSE VSALLGRIPS AVGYQPTLAT DLGGLQERIT TTKKGSITSV QAIYVPADDL
401: TDPAPATTFA HLDATTVLSR QISELGIYPA VDPLDSTSRM LSPHILGEDH YNTARGVQKV LQNYKNLQDI IAILGMDELS EDDKMTVARA RKIQRFLSQP
501: FHVAEVFTGA PGKYVDLKES INSFQGVLDG KYDDLSEQSF YMVGGIDEVI AKAEKIAKES AA

Best Arabidopsis Sequence Match ( AT5G08680.1 )
(BLAST)

001: MASRRILSSL LRSSSSRSTS KSSLIGSRNP RLLSPGPAHG AAPCGTLLGR VAEYSTSSPA NSAAPSSAPA KDEGKKTYDY GGKGAIGRVC QVIGAIVDVR
101: FEDQEGLPPI MTSLEVQDHP TRLVLEVSHH LGQNVVRTIA MDGTEGLVRG RKVLNTGAPI TVPVGRATLG RIMNVLGEPI DERGEIKTEH YLPIHRDAPA
201: LVDLATGQEI LATGIKVVDL LAPYQRGGKI GLFGGAGVGK TVLIMELINN VAKAHGGFSV FAGVGERTRE GNDLYREMIE SGVIKLGEKQ SESKCALVYG
301: QMNEPPGARA RVGLTGLTVA EYFRDAEGQD VLLFIDNIFR FTQANSEVSA LLGRIPSAVG YQPTLASDLG ALQERITTTK KGSITSVQAI YVPADDLTDP
401: APATTFAHLD ATTVLSRQIS ELGIYPAVDP LDSTSRMLSP HILGEEHYNT ARGVQKVLQN YKNLQDIIAI LGMDELSEDD KLTVARARKI QRFLSQPFHV
501: AEIFTGAPGK YVDLKENINS FQGLLDGKYD DLSEQSFYMV GGIDEVVAKA EKIAKESAA

Arabidopsis Description

ATP synthase subunit beta-3, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9C5A9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.