Factsheet for PGSC0003DMT400068136

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g063330.2.1	Tomato	cytosol, unclear	99.52	99.52
PGSC0003DMT400074197	Potato	cytosol	96.63	96.63
Bra003633.1-P	Field mustard	cytosol	94.22	94.22
CDX79274	Canola	cytosol	94.22	94.22
CDY57944	Canola	cytosol	94.22	94.22
KRH46991	Soybean	nucleus	94.06	94.06
AT1G78900.1	Thale cress	cytosol	94.06	94.06
Bra008385.1-P	Field mustard	cytosol	88.76	94.05
CDX88489	Canola	cytosol	93.9	93.9
KRH44667	Soybean	nucleus	93.9	93.9
CDX87424	Canola	cytosol	93.9	93.9
Bra035074.1-P	Field mustard	cytosol	93.58	93.58
CDY67023	Canola	cytosol	75.76	93.1
GSMUA_Achr11P...	Banana	cytosol	92.78	93.08
GSMUA_Achr1P10520_001	Banana	plasma membrane	92.46	92.75
GSMUA_Achr9P23040_001	Banana	cytosol	92.3	92.59
EER90164	Sorghum	cytosol	91.81	92.11
EES04615	Sorghum	cytosol	91.65	91.95
Zm00001d053765_P003	Maize	cytosol	91.33	91.63
Zm00001d015426_P001	Maize	cytosol	73.84	91.45
Os06t0662000-01	Rice	nucleus, plasma membrane	90.85	91.29
HORVU6Hr1G069640.1	Barley	cytosol, mitochondrion	8.51	89.83
Os02t0175400-01	Rice	plasma membrane	89.25	89.53
TraesCS7A01G489500.1	Wheat	plastid	88.28	89.43
TraesCS7D01G475900.2	Wheat	cytosol	88.28	89.43
TraesCS7B01G392600.1	Wheat	plastid	88.92	81.71
Zm00001d015427_P001	Maize	extracellular, plastid	15.41	80.0
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	83.15	64.35
PGSC0003DMT400068704	Potato	cytosol	19.26	25.05
PGSC0003DMT400008800	Potato	cytosol	19.42	23.09
PGSC0003DMT400078610	Potato	mitochondrion	20.39	23.05
PGSC0003DMT400078507	Potato	cytosol	20.39	22.84
PGSC0003DMT400015365	Potato	mitochondrion	20.06	22.24
PGSC0003DMT400002642	Potato	cytosol	12.68	19.36

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	EntrezGene:102582778	Gene3D:2.40.30.20	Gene3D:2.40.50.100
MapMan:24.1.1.2.1	Gene3D:3.40.50.300	InterPro:ATP-synth_a_Xtn	InterPro:ATP_synth_asu-like_sf	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf
InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd	InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_V1-cplx_asu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0033180	GO:GO:0046034	GO:GO:0046961	GO:GO:1902600
InterPro:IPR023366	InterPro:IPR024034	UniProt:M1CII0	HAMAP:MF_00309	InterPro:P-loop_NTPase	PFAM:PF00006
PFAM:PF02874	PFAM:PF16886	EnsemblPlantsGene:PGSC0003DMG400026502	PGSC:PGSC0003DMG400026502	EnsemblPlants:PGSC0003DMT400068136	ScanProsite:PS00152
PANTHER:PTHR43607	PANTHER:PTHR43607:SF3	SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	TIGRFAMs:TIGR01042
UniParc:UPI0002953487	InterPro:V-ATPase_asu	RefSeq:XP_006357450.1	SEG:seg	:	:

Description

Vacuolar H+-ATPase A2 subunit isoform [Source:PGSC_GENE;Acc:PGSC0003DMG400026502]

Coordinates

chr6:+:48043865..48051749

Molecular Weight (calculated)

68631.2 Da

IEP (calculated)

5.096

GRAVY (calculated)

-0.175

Length

623 amino acids

Sequence
(BLAST)

001: MPSLFGGPLT TFEDSEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTRKPLS VELGPGILGN
101: IFDGIQRPLK TIAKRSGDVY IPRGVSVPAL DKDILWEFEP KKIGEGDILT GGDLYANVFE NSLMEHHVAL PPDAMGKITY IAPAGHYSLK DTVLELEFQG
201: VKKQFTMLQS WPVRTPRPVA AKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDTVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLG IVQVFWGLDK KLAQRKHFPS VNWLISYSKY SGALESFYEK FDPDFITIRT KAREVLQRED DLNEIVQLVG
501: KDALAETDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMLRNIIHF YNLANQAVER GAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDAL
601: VAKFKKLHDD LTAGFRNLED ETR

Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)

001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR

Arabidopsis Description

VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.