Skip to main content
crop-pal logo
Tomato
Search for another protein from :
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear, cytosol

Predictor Summary:
  • cytosol 4
  • vacuole 1
  • mitochondrion 2
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, unclear
Any Predictor:cytosol, mitochondrion, plasma membrane, vacuole
BaCelLo:cytosol
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:mitochondrion, plasma membrane
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 unclear: 26455813
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400068136 Potato cytosol 99.52 99.52
Solyc12g055800.1.1 Tomato plastid 96.63 96.63
KRH46991 Soybean nucleus 94.22 94.22
Bra003633.1-P Field mustard cytosol 94.06 94.06
KRH44667 Soybean nucleus 94.06 94.06
CDY57944 Canola cytosol 94.06 94.06
CDX79274 Canola cytosol 94.06 94.06
AT1G78900.1 Thale cress cytosol 93.9 93.9
CDX88489 Canola cytosol 93.74 93.74
CDX87424 Canola cytosol 93.74 93.74
Bra008385.1-P Field mustard cytosol 88.44 93.71
Bra035074.1-P Field mustard cytosol 93.42 93.42
CDY67023 Canola cytosol 75.76 93.1
GSMUA_Achr11P... Banana cytosol 92.78 93.08
GSMUA_Achr1P10520_001 Banana plasma membrane 92.46 92.75
GSMUA_Achr9P23040_001 Banana cytosol 92.3 92.59
EER90164 Sorghum cytosol 91.81 92.11
EES04615 Sorghum cytosol 91.65 91.95
Zm00001d015426_P001 Maize cytosol 74.0 91.65
Zm00001d053765_P003 Maize cytosol 91.33 91.63
Os06t0662000-01 Rice nucleus, plasma membrane 90.85 91.29
Os02t0175400-01 Rice plasma membrane 89.25 89.53
TraesCS7A01G489500.1 Wheat plastid 87.96 89.11
TraesCS7D01G475900.2 Wheat cytosol 87.96 89.11
HORVU6Hr1G069640.1 Barley cytosol, mitochondrion 8.35 88.14
TraesCS7B01G392600.1 Wheat plastid 88.6 81.42
Zm00001d015427_P001 Maize extracellular, plastid 15.25 79.17
HORVU7Hr1G109770.1 Barley cytosol, mitochondrion 82.83 64.1
Solyc01g111760.2.1 Tomato plastid 19.42 25.26
Solyc10g055670.1.1 Tomato cytosol, nucleus, unclear 19.26 25.05
Solyc02g091130.2.1 Tomato unclear 20.22 22.87
Solyc05g008460.2.1 Tomato plastid 20.22 22.62
Solyc04g007550.2.1 Tomato plastid 19.74 21.89
Solyc04g039850.1.1 Tomato cytosol 4.33 19.42
Solyc01g007320.2.1 Tomato plastid 18.94 19.38
Solyc12g042230.1.1 Tomato cytosol 2.89 19.35
Protein Annotations
KEGG:00190+3.6.3.14KEGG:00195+3.6.3.14Gene3D:1.10.1140.10Gene3D:2.40.30.20Gene3D:2.40.50.100MapMan:24.1.1.2.1
Gene3D:3.40.50.300InterPro:ATP-synth_a_XtnInterPro:ATP_synth_asu-like_sfInterPro:ATPase_F1/V1/A1_a/bsu_NInterPro:ATPase_F1/V1/A1_a/bsu_N_sfInterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_F1/V1_b/a_CInterPro:ATPase_V1-cplx_asuInterPro:ATPase_a/bsu_ASGO:GO:0000166GO:GO:0000325GO:GO:0003674
GO:GO:0003824GO:GO:0005215GO:GO:0005488GO:GO:0005524GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0006139
GO:GO:0006810GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0015991GO:GO:0015992
GO:GO:0016020GO:GO:0016787GO:GO:0033180GO:GO:0046034GO:GO:0046961GO:GO:1902600
InterPro:IPR023366InterPro:IPR024034UniProt:K4C764HAMAP:MF_00309InterPro:P-loop_NTPasePFAM:PF00006
PFAM:PF02874PFAM:PF16886ScanProsite:PS00152PANTHER:PTHR43607PANTHER:PTHR43607:SF3SUPFAM:SSF47917
SUPFAM:SSF50615SUPFAM:SSF52540EnsemblPlantsGene:Solyc06g063330.2EnsemblPlants:Solyc06g063330.2.1TIGRFAMs:TIGR01042UniParc:UPI0002766D1A
InterPro:V-ATPase_asuSEG:seg::::
Description
No Description!
Coordinates
chr6:-:40018973..40026803
Molecular Weight (calculated)
68692.3 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.179
Length
623 amino acids
Sequence
(BLAST)
001: MPSLFGGPLT TFEDSEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLMVND PVLRTRKPLS VELGPGILGN
101: IFDGIQRPLK TIAKRSGDVY IPRGVSVPAL DKDILWEFEP KKIGEGDILT GGDLYANVFE NSLMEHHVAL PPDAMGKITY IAPAGHYSLK DTVLELEFQG
201: VKKQFTMLQS WPVRTPRPVA AKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDTVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLG IVQVFWGLDK KLAQRKHFPS VNWLISYSKY SGALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAETDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMLRNIIHF YNLANQAVER GAGMDGQKMT YTLIKHRLGD LFYRLVSQKF EDPAEGEDAL
601: VAKFKKLHDD LTAGFRNLED ETR
Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
Arabidopsis Description
VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.