Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G016830.2 | Barley | cytosol, mitochondrion, nucleus | 28.06 | 38.61 |
| ATCG00480.1 | Thale cress | cytosol | 80.58 | 22.49 |
| Solyc01g007320.2.1 | Tomato | plastid | 86.33 | 19.7 |
| CDX98579 | Canola | plastid | 79.86 | 18.47 |
| CDX99946 | Canola | plastid | 79.86 | 18.47 |
| CDY38701 | Canola | plastid | 79.86 | 18.47 |
| Solyc05g008460.2.1 | Tomato | plastid | 60.43 | 15.08 |
| Solyc02g091130.2.1 | Tomato | unclear | 59.71 | 15.06 |
| Solyc04g007550.2.1 | Tomato | plastid | 60.43 | 14.95 |
| Zm00001d020223_P001 | Maize | cytosol | 4.32 | 5.31 |
| Solyc01g111760.2.1 | Tomato | plastid | 15.11 | 4.38 |
| Solyc06g063330.2.1 | Tomato | cytosol, unclear | 19.42 | 4.33 |
| Solyc12g055800.1.1 | Tomato | plastid | 19.42 | 4.33 |
| Solyc10g055670.1.1 | Tomato | cytosol, nucleus, unclear | 14.39 | 4.18 |
| Solyc12g042230.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc04g039850.1.1 | EnsemblPlantsGene:Solyc04g039850.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd | InterPro:P-loop_NTPase | KEGG:00190+3.6.3.14 | KEGG:00195+3.6.3.14 | PANTHER:PTHR15184 |
| PANTHER:PTHR15184:SF43 | PFAM:PF00006 | SUPFAM:SSF52540 | UniParc:UPI0002766011 | UniProt:K4BRC3 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4:-:12523987..12524468
Molecular Weight (calculated)
15164.6 Da
IEP (calculated)
10.001
GRAVY (calculated)
-0.026
Length
139 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAIDGLTRG MTVIEIGPVD NLGPVDTSRT SPIHRSAPAF IQLDTKLSIF EKGIKVVDIL APYRRGGKIG LFGRAEVGKT VLIMEFINNI AKAHGGVSVF
101: GRVGERTRKG NDLYMEMKEY GVINKENIVE SNVALVYGR
101: GRVGERTRKG NDLYMEMKEY GVINKENIVE SNVALVYGR
001: MRTNPTTSNP EVSIREKKNL GRIAQIIGPV LDVAFPPGKM PNIYNALVVK GRDTLGQEIN VTCEVQQLLG NNRVRAVAMS ATEGLKRGMD VVDMGNPLSV
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
101: PVGGATLGRI FNVLGEPVDN LGPVDTRTTS PIHKSAPAFI ELDTKLSIFE TGIKVVDLLA PYRRGGKIGL FGGAGVGKTV LIMELINNIA KAHGGVSVFG
201: GVGERTREGN DLYMEMKESG VINEQNLAES KVALVYGQMN EPPGARMRVG LTALTMAEYF RDVNEQDVLL FIDNIFRFVQ AGSEVSALLG RMPSAVGYQP
301: TLSTEMGTLQ ERITSTKKGS ITSIQAVYVP ADDLTDPAPA TTFAHLDATT VLSRGLAAKG IYPAVDPLDS TSTMLQPRIV GEEHYETAQQ VKQTLQRYKE
401: LQDIIAILGL DELSEEDRLT VARARKIERF LSQPFFVAEV FTGSPGKYVG LAETIRGFNL ILSGEFDSLP EQAFYLVGNI DEATAKATNL EMESKLKK
Arabidopsis Description
ATPBATP synthase subunit beta, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P19366]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.