Factsheet for Solyc12g055800.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 4
vacuole 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074197	Potato	cytosol	99.52	99.52
Solyc06g063330.2.1	Tomato	cytosol, unclear	96.63	96.63
KRH46991	Soybean	nucleus	94.54	94.54
KRH44667	Soybean	nucleus	94.22	94.22
Bra003633.1-P	Field mustard	cytosol	93.9	93.9
CDY57944	Canola	cytosol	93.9	93.9
CDX79274	Canola	cytosol	93.9	93.9
AT1G78900.1	Thale cress	cytosol	93.74	93.74
VIT_04s0008g02580.t01	Wine grape	cytosol	94.86	93.66
CDX88489	Canola	cytosol	93.42	93.42
CDX87424	Canola	cytosol	93.42	93.42
Bra008385.1-P	Field mustard	cytosol	88.12	93.37
Bra035074.1-P	Field mustard	cytosol	93.1	93.1
CDY67023	Canola	cytosol	75.76	93.1
GSMUA_Achr11P...	Banana	cytosol	92.78	93.08
Zm00001d015426_P001	Maize	cytosol	74.8	92.64
EER90164	Sorghum	cytosol	92.3	92.59
GSMUA_Achr1P10520_001	Banana	plasma membrane	92.13	92.43
EES04615	Sorghum	cytosol	91.97	92.27
GSMUA_Achr9P23040_001	Banana	cytosol	91.97	92.27
Zm00001d053765_P003	Maize	cytosol	91.65	91.95
Os06t0662000-01	Rice	nucleus, plasma membrane	91.49	91.94
TraesCS7A01G489500.1	Wheat	plastid	88.92	90.08
TraesCS7D01G475900.2	Wheat	cytosol	88.92	90.08
Os02t0175400-01	Rice	plasma membrane	89.41	89.69
HORVU6Hr1G069640.1	Barley	cytosol, mitochondrion	8.35	88.14
TraesCS7B01G392600.1	Wheat	plastid	89.25	82.01
Zm00001d015427_P001	Maize	extracellular, plastid	15.25	79.17
HORVU7Hr1G109770.1	Barley	cytosol, mitochondrion	83.79	64.84
Solyc01g111760.2.1	Tomato	plastid	19.9	25.89
Solyc10g055670.1.1	Tomato	cytosol, nucleus, unclear	19.74	25.68
Solyc02g091130.2.1	Tomato	unclear	20.55	23.23
Solyc05g008460.2.1	Tomato	plastid	20.55	22.98
Solyc04g007550.2.1	Tomato	plastid	20.06	22.24
Solyc01g007320.2.1	Tomato	plastid	19.1	19.54
Solyc04g039850.1.1	Tomato	cytosol	4.33	19.42
Solyc12g042230.1.1	Tomato	cytosol	2.89	19.35

Protein Annotations

KEGG:00190+3.6.3.14	KEGG:00195+3.6.3.14	Gene3D:1.10.1140.10	Gene3D:2.40.30.20	Gene3D:2.40.50.100	MapMan:24.1.1.2.1
Gene3D:3.40.50.300	InterPro:ATP-synth_a_Xtn	InterPro:ATP_synth_asu-like_sf	InterPro:ATPase_F1/V1/A1_a/bsu_N	InterPro:ATPase_F1/V1/A1_a/bsu_N_sf	InterPro:ATPase_F1/V1/A1_a/bsu_nucl-bd
InterPro:ATPase_F1/V1_b/a_C	InterPro:ATPase_V1-cplx_asu	InterPro:ATPase_a/bsu_AS	GO:GO:0000166	GO:GO:0000325	GO:GO:0003674
GO:GO:0003824	GO:GO:0005215	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006139
GO:GO:0006810	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0015991	GO:GO:0015992
GO:GO:0016020	GO:GO:0016787	GO:GO:0016887	GO:GO:0033180	GO:GO:0046034	GO:GO:0046961
GO:GO:1902600	InterPro:IPR023366	InterPro:IPR024034	UniProt:K4DFR1	HAMAP:MF_00309	InterPro:P-loop_NTPase
PFAM:PF00006	PFAM:PF02874	PFAM:PF16886	ScanProsite:PS00152	PANTHER:PTHR43607	PANTHER:PTHR43607:SF3
SUPFAM:SSF47917	SUPFAM:SSF50615	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g055800.1	EnsemblPlants:Solyc12g055800.1.1	TIGRFAMs:TIGR01042
UniParc:UPI0002769B96	InterPro:V-ATPase_asu	:	:	:	:

Description

No Description!

Coordinates

chr12:-:61774283..61781958

Molecular Weight (calculated)

68560.2 Da

IEP (calculated)

4.964

GRAVY (calculated)

-0.163

Length

623 amino acids

Sequence
(BLAST)

001: MPSIVGGPMT TFEDSEKESE YGYVRKVSGP VVVADGMGGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLMVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIAKRSGDVY IPRGVSVPAL DKDILWEFQP KKIGEGDLLT GGDLYATVFE NSLMEHRVAL PPDAMGKITY IAPAGQYSLN DTVLELEFQG
201: VKKQVTMLQT WPVRSPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDTVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERTGSVTIV GAVSPPGGDF SDPVTSATLG IVQVFWGLDK KLAQRKHFPS VNWLISYSKY SGALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAETDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMLRNIIHF YNLANQAVER GAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDVL
601: VGKFQKLHDD LVAGFRNLED ETR

Best Arabidopsis Sequence Match ( AT1G78900.1 )
(BLAST)

001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR

Arabidopsis Description

VHA-AVHA-A [Source:UniProtKB/TrEMBL;Acc:A0A178W720]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.