Factsheet for TraesCS3D01G412500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 23128297
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G417000.2	Wheat	golgi	97.97	97.97
HORVU3Hr1G092660.1	Barley	plasma membrane	98.11	89.4
Os01t0911200-01	Rice	plasma membrane	85.61	84.38
OQU88089	Sorghum	plasma membrane	84.3	83.69
Zm00001d012086_P004	Maize	plasma membrane	82.27	81.91
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	76.45	69.76
GSMUA_Achr4P29530_001	Banana	plasma membrane	64.53	63.43
KRH67412	Soybean	plasma membrane	59.88	59.97
KRG95690	Soybean	endoplasmic reticulum	59.59	59.59
KRH32199	Soybean	endoplasmic reticulum	58.72	58.64
Solyc07g014700.2.1	Tomato	nucleus	53.2	56.31
CDX82806	Canola	plasma membrane	55.81	56.14
AT4G21150.1	Thale cress	plasma membrane	56.1	55.86
CDX79039	Canola	plasma membrane	55.52	55.77
CDY58482	Canola	plasma membrane	55.52	54.73
CDX94025	Canola	plasma membrane	55.67	54.64
GSMUA_Achr10P...	Banana	plasma membrane	58.58	54.39
VIT_07s0005g03640.t01	Wine grape	plasma membrane	59.16	53.84
Bra013507.1-P	Field mustard	plasma membrane	52.91	52.3
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	56.54	52.14
CDY65340	Canola	plasma membrane	52.62	50.91
Bra038784.1-P	Field mustard	plasma membrane	56.1	50.79

Protein Annotations

MapMan:18.1.1.5.6	ncoils:Coil	GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005773	GO:GO:0005774	GO:GO:0005783	GO:GO:0005794
GO:GO:0005886	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009409	GO:GO:0009505	GO:GO:0009506
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	GO:GO:0030312
PFAM:PF05817	PANTHER:PTHR12640	SignalP:SignalP-noTM	InterPro:Swp1	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS3D01G412500
EnsemblPlants:TraesCS3D01G412500.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:524864553..524870537

Molecular Weight (calculated)

74609.1 Da

IEP (calculated)

6.408

GRAVY (calculated)

0.161

Length

688 amino acids

Sequence
(BLAST)

001: MAWRLPPLAV LLLLVAAAVA PLSSAVRPVS DAHRSVAAEL FAASPDDLET TYEAVRTFKM LGVQRDKGLD GKACKLAAHT LSSSSSPAKD LFQAVQIAGV
101: LGCSVDAGVY DDVASRLKAV IKDTDSLLEF YYSVGGLLSL KEQGHSVVLS DADSTFHAIK ALSQSDGRWR YDTNSAESST FAAGIALEAL AGVVSLSDAE
201: VDPSMIGVVK NDIVKLFGTI KSYDDGTFYF DEKYVDGSEY KGPITTSASV VRGVTSFANV VSGKLNIPGE KILGLAKFFL GIGLPGSAKD CFNQIESLSL
301: LENNRIFVPL ILSLPSKVLS LTSKDQLKVE VTTVFGSAAP PLRVNLVQVL GSDSKIITTD SKELQFDLDN NVHYLDITPL KIDVGKYSLV FEITLQDSEH
401: ETVYTTGGRN TESVVVTGLI KVDKAEIGIS ENDAGSAESV EKLDLLKDTK VSLSANHLQK LRLSFQLSTP LGRTFKPHQV FLKLKHESKV EHLFVVPGSA
501: RQFKIVLDFL GLVEKFYYLS GTYDLELSVG DASMENSFLR ALGQLELDLP EAPEKAPRPP AQAVDPLAKF RPQKEIEHIF RVPEKRPLQE VSLAFTGLTL
601: LPFIGFLIGL MRLGVNLKNF PSLPGPAAFA SLFHAGIAAV LLLYVLFWVK LDLFTTLKYL SFLGVFLVFV GHRTLSHLSN TTAKQKTA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.