Factsheet for Solyc07g014700.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g046330.2.1	Tomato	endoplasmic reticulum, nucleus	80.31	69.97
KRH67412	Soybean	plasma membrane	66.62	63.03
KRG95690	Soybean	endoplasmic reticulum	66.0	62.35
KRH32199	Soybean	endoplasmic reticulum	65.85	62.12
VIT_07s0005g03640.t01	Wine grape	plasma membrane	69.85	60.05
AT4G21150.1	Thale cress	plasma membrane	61.54	57.89
CDX79039	Canola	plasma membrane	60.77	57.66
CDX82806	Canola	plasma membrane	60.62	57.6
CDY58482	Canola	plasma membrane	60.92	56.73
GSMUA_Achr4P29530_001	Banana	plasma membrane	60.46	56.14
CDX94025	Canola	plasma membrane	60.31	55.92
OQU88089	Sorghum	plasma membrane	58.0	54.4
Os01t0911200-01	Rice	plasma membrane	58.0	54.01
Zm00001d012086_P004	Maize	plasma membrane	57.38	53.98
Bra013507.1-P	Field mustard	plasma membrane	57.54	53.74
TraesCS3D01G412500.1	Wheat	golgi	56.31	53.2
TraesCS3A01G417000.2	Wheat	golgi	55.85	52.76
Bra038784.1-P	Field mustard	plasma membrane	61.08	52.24
CDY65340	Canola	plasma membrane	55.69	50.91
GSMUA_Achr10P...	Banana	plasma membrane	54.92	48.18
HORVU3Hr1G092660.1	Barley	plasma membrane	55.85	48.08
Zm00001d042398_P001	Maize	mitochondrion, plasma membrane	53.38	46.02

Protein Annotations

MapMan:18.1.1.5.6	GO:GO:0003674	GO:GO:0003824	GO:GO:0004579	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487
GO:GO:0008150	GO:GO:0008152	GO:GO:0008250	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0019538	UniProt:K4CC89	PFAM:PF05817	PANTHER:PTHR12640
EnsemblPlantsGene:Solyc07g014700.2	EnsemblPlants:Solyc07g014700.2.1	InterPro:Swp1	TMHMM:TMhelix	UniParc:UPI000276BBD9	SEG:seg

Description

No Description!

Coordinates

chr7:-:5107189..5117910

Molecular Weight (calculated)

71075.9 Da

IEP (calculated)

6.639

GRAVY (calculated)

0.170

Length

650 amino acids

Sequence
(BLAST)

001: MDLLLAYLKE TYEALRTFKV LGIGHQFDIK AKSCKSVVDT VGSPSSTLKD LFQALEVNGI LKCELSKETF AGITSRLKDS VNTASSLLDY YYSIGSLVLI
101: KGQTSEVDVH LGGADSVFRA IKALSQSDGR WRYSSNNPES STFAAGIALE SLAGVISLAS SEIDHSLISL VKNDISKLLD GVEKYDDGAY YFDEKLVDAH
201: GHQSPLSASS AVVRGITAFA TASDEDLNLP GDKILGLARF FLSVGIPANA EDLFYQLDAL ASLENNRVSI PLILSLPTAV LSLTRKDQLK VNVNTVLGSA
301: APSLSVKLKQ IFSSGSKDAS IIDQYLKFDP ENAVHFLDAL PENIDVGSYI FSLEIVLDNP EDKKIYATGG RTKVPIYVTG FIKVDHPDVA VLDSDLGNVE
401: TQKRFDLAGK NTLSLSANHL QKLRLSFQLT SPLGNVFKPH QAFLKLRHES KVEHIFVVEN SGKNFEIILD FLGLVEKFFY LSGRYDIQLT VGDAVMENSF
501: FLLLGSIELD LPEPPEKATR PPPQPIDSTS RFGPKAEISH IFRAPEKRPP KGLSLIFLAL VLLPFIGFLV GLLRLQVNLK NFPKASALAT FAILFHLGIA
601: AVLTLYLLFW LKLNLFTTLQ ALGFLGIFLM FVGHRTLSYL ASSSAKLKSA

Best Arabidopsis Sequence Match ( AT4G21150.3 )
(BLAST)

001: MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN
101: GILKCKIGEA GPKDIVSQLQ AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSNNP ESSTFAAGLA YETLAGVISL
201: APSEFDPSLI QSVKTGILKL SDSIQKYDDG TFYFDEKSVD ASQGPISTTA SVIRGLTSFA ASESTGLNLP GDKIVGLAKF FLGVGIPGDA KDFFNQIDAL
301: ACLEDNKFSV PLILSLPSTV ISLTKKEPLK VKVSTVLGSK APALSVKLTQ ALSSKSVDSS VINNQELKFD ADSATYFLDS FPKNFDIGKY TFVFKIVLDE
401: SAHEKVYITE AQTKVPIAAT GAISIENAEI AVLDSDIGSV ESQKKLDLTK DGAVSLSANH LQKLRLSFQL TTPLGNAFKP HQAFFKLKHE SQVEHIFLVK
501: TSGKKSELVL DFLGLVEKLY YLSGKYEIQL TIGDASMENS LLSNIGHIEL DLPERPEKAT RPPLQSTEPY SRYGPKAEIS HIFRIPEKLP AKQLSLVFLG
601: VIVLPFIGFL IGLTRLGVNI KSFPSSTGSA ISALLFHCGI GAVLLLYVLF WLKLDLFTTL KALSLLGVFL LFVGHRTLSQ LASASNKLKS A

Arabidopsis Description

RPN2Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z16]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.